Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00975 ATGTCGACTTCTGGCGAGGATCAACCCCATCCCCCTCACTTATCTCAATTCAAATTCGACCTATTGCAGCATCCTTCTCCTCACTCTCACTTTCATCACAATCCTCCTCTTCCCCTTCCTCATTCTCATTCTCCTTTTCCTATTCTACCCGTCACTTTGAATCAAAGATATGAAATCAATAATTTCAAGTCTCACACAAGTAACATCGAAGTAGTTCCTAGTCCGAGCAAAACAGTAAATCTTCCTCCTCCACTTCAAGCGGAGCTTAGCCAAAGAGGAAAGCATCATGGTAAAACAAAAGTTCCAAGAAATGCAAAATCTGGGACTAACAGATCAAATGCCGAATCTCCAAATCCTACTGCAGGCAACAACTGTCGTTATGACAGTTCCTTAGGATTGTTGACCAAGAAATTTGTCAGCTTGATCCAGGATGCTAAGGATGGTACCCTTGATCTAAATAAAACTGCTGAGATTTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGTAA 573 0.4031 MSTSGEDQPHPPHLSQFKFDLLQHPSPHSHFHHNPPLPLPHSHSPFPILPVTLNQRYEINNFKSHTSNIEVVPSPSKTVNLPPPLQAELSQRGKHHGKTKVPRNAKSGTNRSNAESPNPTAGNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00975 190 Pfam E2F/DP family winged-helix DNA-binding domain 128 189 IPR003316 GO:0005667|GO:0006355
Seca3g00975 190 SMART E2F_TDP_2 126 190 IPR003316 GO:0005667|GO:0006355
Seca3g00975 190 MobiDBLite consensus disorder prediction 89 125 - -
Seca3g00975 190 SUPERFAMILY "Winged helix" DNA-binding domain 126 189 IPR036390 -
Seca3g00975 190 PANTHER TRANSCRIPTION FACTOR E2F 82 190 IPR015633 GO:0000978|GO:0006357
Seca3g00975 190 Gene3D - 120 190 IPR036388 -
Seca3g00975 190 FunFam E2F transcription factor 1 120 190 - -
Seca3g00975 190 MobiDBLite consensus disorder prediction 103 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00975 Seca-Chr3 16374028 16375845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00975 94 190 E2F-DP Transcription Factor Family AT1G47870 69.000 1.45e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca3g00975 E2F_TDP 2.9e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00975 K06620 - gmx:100811650 207.994