Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00962 ATGTGCCTTCAACCACTGGATTCCGAAAAAGACATGTTTCCCATATCTGAGTTTGGGCTAAAACACAGCAAGCATCCCAGTGAGTATTTCTGCAAGACTTTAACTGCTAGTGACACGAGCACACATGGTGGCTTTTCTGTACCACGCAGGGCTGCAGAAAAGCTCTTTCCTCCATTGGATTACACGACTCAACCACCAACCCAAGAACTTGTTGTCAGAGATTTGCATGATAATACCTGGACATTTCGACATATATACCGCGGTCAGCCAAAGAGACACCTTCTCACAACTGGATGGAGTTTGTTTGTAGGCTTGAAAAGGCTTAAAGCAGGTGATTCTGTTCTTTTTATCAGGGATGAGAATTCGCAATTGCTAATTGGTGTTAGGCGTGCTAATCGCCAACAGACATCACTTCCATCATCAGTGCTTTCTGCTGATAGTATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGAAGTCCATTCAATATTTTCTACAATCCAAGAGCATGCCCTTCAGCATTTGTTATTCAACTAGCTAGATACTGGAAAGCCGTATATGAGACTCAGCTCTCAGTTGGCTTGAGATTTGGTATGATGTTTGAGACAGAGGAATCAGGTAAGCGCAGATATATGGGTAAAATTATCAGCATAAGTGATTTGGATCCTCTAAGGTGGCCTGGTTCTAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTAGTGATAAGCAGAATAGAGTTAGTTCATGGGACATTGAGATTCCTGAAAGTCTTTTCATCTTTCAGTCTTTGACTTCAAGTCTTAAACGGCCATTGCAATCTGGATTACTGGGTGCAGAAAACGGGTGGAACACTTTTTCAAGAAGACCTTTTATGCGAGTTCCTGAAAATGGAATTGTGGAGCTCTCAAACACCATGCCAAATCTGTACTCAGAACAAATGTCCAAGCTTCTTTTTAAACCCCAACTTGTTAACAATGCTGGAAACTCTTTTTGGGTCAGACAACAAGAATCTTCTGCTAAGAGAGGTCCCTTAGAAGAGGTGAATATCACACTGCCAATAGGTTATCAACAAGCTCATCTTGCAAGTTCAGTGAGCTTACCACAACAAAATCCACATTTTCAATCTGAACCACACCAATCTAACACCTTGAACTTGCATCCACATTTTAAAAGTGATCAACTTGAAAAATTGTATCCTCCGGCCAAAATTGATAATCCTTTGCCTTCTGGAACAGTTACTGATAAGCCAAAAGTAGAATCTGAGGTGTCTAGTGATGGTATATTTGACTACCCTTCCTTGGAAGGCTGCAACATTGAAAAAATGGCATTAAATCTTGTTAGCCCCCATAGCCTTACAGACCAATTGACATTCCTTAATCAAAACCAGACTCCATTGGTGGGTGATATTCCTCATCTAGACATTGATGAATGGATGATGTATTCTTCTTGGCAAACTCTTGTTGGGCAAAATGGATCAACTGGACCTCTAGCAGCTTTGCAAGAACAATCTGTGCTTCTCTCCCAAGAAGCTAATCTCCCTTTACCTTCTGTAAGCCAAGACATGTGGGGTCCTGTGAAAAATTTGAAGCTTTTACCTCAATCAGACCAGCTAACTTCCATCTCTCAGCAGCATAGCCTCAGTTGTATATCTACTAGTTCAAACAATTTGAGGGATCTCTCAGCTGAGAGCAACAATCAAAGTGAAATTTACAACAGCTTCACTAATGTTGATGGTAATAAAAGTGTAAGTGCTACAATGGGTAATCCTTCTACTTCAAGTGCTATTTTGGACGAGTTTTGCAATTTTAAGGAAAGGAACTTCAAGAACTCATCAGATTGCATGCTGAGCAACTTAAGTACTAGCCAAGATGTCCAGTCTCAGATAACATCCACAAGTTTAGTAGAGTCACATGCCTTTTCAGTGCAGGACATTCCTGACAACTCAGTTGGTGCATCTTCAAGCCATGTTGATTTTGATGAAAGCAGCATTCTGCAGAATAATTCATGGCCGCAAGTAGCTGCGCAGCCTGCACGTAGGCGTACCTACACAAAGGTGCAAAGGGCAGGTTCTGTAGGAAGATCAATTGATGTGACTACTTTCAGAAACTATGAGGAACTGGTCCGAGCAATTGAATGCATGTTTGGACTGGAGGGTCTGCTGAATGACACTAGAGGTTCAGGATGGAAATTGGTGTATGTGGATTATGAGAATGATGTTCTGCTTGTGGGGGATGATCCTTGGGAGGAATTTGTGGGTTGCGTAAGGTGCATCAGAATTTTGTCACCAACAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAGCTTCTAAATAGTGGTGCTTTTCAAGGGATCAATGGTTGCATATCAGGTGGCTCTAGTTGA 2406 0.4214 MCLQPLDSEKDMFPISEFGLKHSKHPSEYFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTTQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGLKRLKAGDSVLFIRDENSQLLIGVRRANRQQTSLPSSVLSADSMHIGVLAAAAHAAANRSPFNIFYNPRACPSAFVIQLARYWKAVYETQLSVGLRFGMMFETEESGKRRYMGKIISISDLDPLRWPGSKWRNIQVEWDEPGCSDKQNRVSSWDIEIPESLFIFQSLTSSLKRPLQSGLLGAENGWNTFSRRPFMRVPENGIVELSNTMPNLYSEQMSKLLFKPQLVNNAGNSFWVRQQESSAKRGPLEEVNITLPIGYQQAHLASSVSLPQQNPHFQSEPHQSNTLNLHPHFKSDQLEKLYPPAKIDNPLPSGTVTDKPKVESEVSSDGIFDYPSLEGCNIEKMALNLVSPHSLTDQLTFLNQNQTPLVGDIPHLDIDEWMMYSSWQTLVGQNGSTGPLAALQEQSVLLSQEANLPLPSVSQDMWGPVKNLKLLPQSDQLTSISQQHSLSCISTSSNNLRDLSAESNNQSEIYNSFTNVDGNKSVSATMGNPSTSSAILDEFCNFKERNFKNSSDCMLSNLSTSQDVQSQITSTSLVESHAFSVQDIPDNSVGASSSHVDFDESSILQNNSWPQVAAQPARRRTYTKVQRAGSVGRSIDVTTFRNYEELVRAIECMFGLEGLLNDTRGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSGAFQGINGCISGGSS. 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00962 801 FunFam Auxin response factor 194 266 - -
Seca3g00962 801 Gene3D - 194 267 - -
Seca3g00962 801 FunFam Auxin response factor 28 132 - -
Seca3g00962 801 Pfam B3 DNA binding domain 30 131 IPR003340 GO:0003677
Seca3g00962 801 Gene3D - 684 777 - -
Seca3g00962 801 SUPERFAMILY DNA-binding pseudobarrel domain 20 159 IPR015300 -
Seca3g00962 801 Pfam Auxin response factor 156 239 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca3g00962 801 CDD B3_DNA 29 130 IPR003340 GO:0003677
Seca3g00962 801 ProSiteProfiles B3 DNA-binding domain profile. 30 132 IPR003340 GO:0003677
Seca3g00962 801 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 778 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca3g00962 801 SMART B3_2 30 132 IPR003340 GO:0003677
Seca3g00962 801 Pfam AUX/IAA family 681 774 IPR033389 -
Seca3g00962 801 Gene3D - 28 131 IPR015300 -
Seca3g00962 801 SUPERFAMILY CAD & PB1 domains 701 767 - -
Seca3g00962 801 FunFam Auxin response factor 683 777 - -
Seca3g00962 801 ProSiteProfiles PB1 domain profile. 688 772 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00962 Seca-Chr3 16053054 16058831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00962 1 797 B3 DNA Binding Superfamily AT1G19850 54.024 0.0 779
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca3g00962 AUX_IAA 9.8e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00962 K14486 - gmx:100813003 1113.98