Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00955 ATGGGGAAATCTACCTCCTGCTTCAGACTAATCACATGTGCCGGCGATTCGGCGGAGAATGATGATTTCCAAGTATCTGAGATCAAGGATTCTAATGATAAACGTGGTTGGAGTTTCCGGAAGAAATCTGCAAGGCACCGTGTGCTTAGCAATACCGTCATAGCCGAGGCCCCATCTTCTGCTAATAATAAGGAGAGTTCAGAATGTGCAAATTTTAATTTTCAACCACTTCCTGAACCTAATGTTGTTGAGAAGATTTGCACAACAAATTTCTCTAATGAGAAGCCTCAGTTATCCTCCTTTGAAAGCTCACAAATTGCAGAAAGTAATGTCATTGAAACTGAGAGCAAGGTGGATGTGGATCCACCAGAGTCCGCTGTTATCATCATCCAGGCTGCAATCAGAGGGTTAATGGCTCAGAGAGAACTACTACAGCTTAAGAATGTAGTGAAATTGCAAGCTGCTGTTCGCGGGCACTTGGTCAGGAGGCATGCTGTAGGAACCTTACGTTGTGTTCAAGCCATCGCGAAAATGCAGGTCCTTGTGCGAGCTCGTCGTGCTAAGCAGGCACATCTGGAAAATCATTTAAGTCACAAGGATGGAAATGATTCCTCAAAAGCTTTGGGGAATGAAAATCACGTGACCAAACCAAATATAATGTACACTTCCACTGAGAAGCTGCTTAGTAATAGGTTTGCTCGCCAGCTGTTGGAGTCATCACCAAAGAACAAACCTATCCATGTCAAGTGTGATCCTTCTAAAGCTGATTCTGCTTGGAAATGGTTGGAGAGGTGGATGTCTGTAACATCAAAAGATGTTGCTGAGTTAAAAAAAACTAGCTCTTTGACAGATCAATCAGACAAAAACAAAGATAGCACTTCTATTTGTCAATTAGAAACAGGTATTCCGCCTGAAGTCTTTCTCCAGTCAGCTGACTCAAAGCCCACTGTTGAGGATTCACCTCTACTTTCTGAGGATGAAGAGAAGGTGATTACTTATGACGCCAGTAACTTAAAGTTGCATTCAAGCTGTCCCACATCATCTATTGTAAAAGAGGACCTGGAGCAGGTTCCTCCTGAAGAAATCATTACATATGATGCTAAAGTAGCCTCAGCAGAAACTGATTCCTTCCAAAATGAAATATCAGCATCAGATGCAAGTGCACCAGAGCTTAGTATTAATTCTCTTCATCAGAAGCCTGAAATTGATGGTGACCAGCAAAAACGATCTTTGAAAAGATTTGCCTCAGACCAACTAGAGGCTGAAGGAAAGAAACCTGTAAATGGATCAAGAAAGGTCAGTAATCCTGCATTTATTGCTGCACAGTCAAAATTTGAAGAGCTGAGTTCAATGGCTAATTCAGGTAGGACAAGCAGTGTGTCCTATCAAGATGCATCAGTTGAATCACAAGGAGATACCTCTTTAGTCGGCACAGATAATGCATATAGATCAAAAGATTTATCATCTGAAAATTCTGCTCCCTTTCTTTCAAGAGTTGGTGGTTCTGAATGTGGTACTGAACTTTCCATCTCTTCCACTCTTGATTCACCTGACGTGTCAGAGGTTGGTGCTACGGAAAATGAGCAGCATGATGCCAAAGATTTAGTAGAAGGGACTGGTAATCTTGAAAACAGGATAAACCATGATGATGAGGCCAATGTTCAATGTGCCATTCCAGCTTCTAACTTAGCTACCTCTGTTCTGGATCAGTCAGAGATTGTTGATGACATCAGTGGCAATATGGTTCACTCAGTAGTAGCTGTCAACTCTGAAGAGCCTACTACTAAGACTGAGATAAATACATCTGACCAGGAGAAAGAGCAGGCGGAGGCTATTGTGCAAGGTTCCAGATCATCTCCAGAAGCTTCACCTAGAAGCCATATAACTGTCCCTGAATCACAAGGAACACCTTCGAGTCAGGTATCTATAAAACCTAAAAAGGGCAAAATCAACAAGACAGGATCCAACAGTAAACACGGTACCCTCTCAGTGGGCAACAAATCACCTGCAAATGCAAATGATGATTCAGGTTCGAGAGGCAGTAGGGAGCAACTGCCTAAAGATCAGCGGAGTGGGAAGAGACGCAATTCCTTTGGCTTAGTAAAACCTGATCACATTGATCAAGAACCTAGAGATAGTAGTAGTAACAATAATTCTCTTCCCCATTTCATGCAAGCTACAGAATCTGCTAGGGCCAAGGTCAATGCTAATAACTCTCCTAGATCAAGTCCAGATGTGCATGAACGAGACATCCAAGTTAAGAAGAGACATTCCTTACCTGGTGCCACTGGTAGGCAGGTTTCTCCACGCATCCAACGATCAATGTCTCAGGCACAGCAGAGTGCAAAGGGAAACGGTGTACATCCTCCTCAAGAGAGAAAATGGCTGAGGTGA 2394 0.429 MGKSTSCFRLITCAGDSAENDDFQVSEIKDSNDKRGWSFRKKSARHRVLSNTVIAEAPSSANNKESSECANFNFQPLPEPNVVEKICTTNFSNEKPQLSSFESSQIAESNVIETESKVDVDPPESAVIIIQAAIRGLMAQRELLQLKNVVKLQAAVRGHLVRRHAVGTLRCVQAIAKMQVLVRARRAKQAHLENHLSHKDGNDSSKALGNENHVTKPNIMYTSTEKLLSNRFARQLLESSPKNKPIHVKCDPSKADSAWKWLERWMSVTSKDVAELKKTSSLTDQSDKNKDSTSICQLETGIPPEVFLQSADSKPTVEDSPLLSEDEEKVITYDASNLKLHSSCPTSSIVKEDLEQVPPEEIITYDAKVASAETDSFQNEISASDASAPELSINSLHQKPEIDGDQQKRSLKRFASDQLEAEGKKPVNGSRKVSNPAFIAAQSKFEELSSMANSGRTSSVSYQDASVESQGDTSLVGTDNAYRSKDLSSENSAPFLSRVGGSECGTELSISSTLDSPDVSEVGATENEQHDAKDLVEGTGNLENRINHDDEANVQCAIPASNLATSVLDQSEIVDDISGNMVHSVVAVNSEEPTTKTEINTSDQEKEQAEAIVQGSRSSPEASPRSHITVPESQGTPSSQVSIKPKKGKINKTGSNSKHGTLSVGNKSPANANDDSGSRGSREQLPKDQRSGKRRNSFGLVKPDHIDQEPRDSSSNNNSLPHFMQATESARAKVNANNSPRSSPDVHERDIQVKKRHSLPGATGRQVSPRIQRSMSQAQQSAKGNGVHPPQERKWLR. 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00955 797 Pfam Protein of unknown function (DUF4005) 703 780 IPR025064 -
Seca3g00955 797 MobiDBLite consensus disorder prediction 765 786 - -
Seca3g00955 797 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515
Seca3g00955 797 Pfam IQ calmodulin-binding motif 125 143 IPR000048 GO:0005515
Seca3g00955 797 Gene3D - 123 170 - -
Seca3g00955 797 MobiDBLite consensus disorder prediction 712 742 - -
Seca3g00955 797 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
Seca3g00955 797 ProSiteProfiles IQ motif profile. 145 174 IPR000048 GO:0005515
Seca3g00955 797 PANTHER IQ-DOMAIN 5-RELATED 1 767 - -
Seca3g00955 797 SMART iq_5 145 166 IPR000048 GO:0005515
Seca3g00955 797 SMART iq_5 122 144 IPR000048 GO:0005515
Seca3g00955 797 MobiDBLite consensus disorder prediction 606 679 - -
Seca3g00955 797 MobiDBLite consensus disorder prediction 193 213 - -
Seca3g00955 797 MobiDBLite consensus disorder prediction 506 528 - -
Seca3g00955 797 MobiDBLite consensus disorder prediction 589 797 - -
Seca3g00955 797 MobiDBLite consensus disorder prediction 506 523 - -
Seca3g00955 797 MobiDBLite consensus disorder prediction 680 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00955 Seca-Chr3 16003346 16010539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00955 113 797 IQD Protein Family AT1G19870 38.737 7.43e-115 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00955 - - gmx:100799424 1177.16