Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00953 ATGGAAGGTTTTGATCAAACTGGTGTGATGCACCGAACTAGTTCTACTGCATTTGGTGCTCAAGTTCCAAGACCACCAAACCAGAAACCTGGTATACCACCCTCTCACCCTAACATCAATATCCCACCTACAAGTCCTTATCCCCAATTTTCAGGGTCCTCTTCTCAGAGATTGCGTTCTCCTGGGTCATCATCTCATTCTAGGTCTCTGTCTCAACCACCATTTTTCTCTCTGGATTCTTTGCCCCCATTGAGTCCCTCACCTGTTGCTACTGCTGCTTCCCTTTATGATTCCATTTCCACAACTGATATGGCTGTGGAGGAAAGTGTGGTTTCCTCTCATGCTCCTTCCCCTCCTGTGGCCCTTAACAGAGGTCATGCCCTTCAGGTTGGTCTCAGTCTTCCTCCCCGTAAAGGGCACAGGCGCTCCAGCAGTGATTCCCCTCTTGGAATCTCTGGTTTTATGCAATCTTCTCCTCCATTGGTTAATCCCGGTTGTGGAGGAGAAAACTCTGGGAAGCCGATTCAGTTAGTGTTGAAGGCTTCAATTAAGGATAGAGAACGTGTTGACGAGCCTGTGGATGTGAGGAAAGAGGATGCTGCAGATGATTTGTTTAGTGAATACATGAATTTGGACAATATTGATAATATGAACTTTTCTGGGATGGAAGATAAGGATTTGGATAGCAGAACCAGTGGTTCCAAGACAGTTGAAAGCAGTGATAATGAAGTTGAGAGTCATGTGAATGGAAAAATAGGTGGTACTCAGGGGGCAAGTTCAAGTTGTTCAGAGGAAAGGAGGGAAGGAGTCAAGAGGAGTTCAAATGGGGATATTGCACTGGGTGCACGGCACCGGAGGAGTTTCTCTTTGGATAGTTCCATAGGAAACTTTAATATTGAAGATGGGCTACCTAAATTCCCTCCTTTGAAAAATCAAGTTGGTCAACTCTCACCTAGCAATTCAATAGATGGTAAAACATCTTATTCCTCAATGGAATTCGGAAATGGTGAATTCAGCACTGAGGAGCTAAAGAAAATAATGGAAAATGATAAACTTGCTGAAATTGCCGTGTCTGATCCTAAGCGTGCAAAAAGGATTTTGGCTAATCGTCAATCTGCTGCTCGTTCAAAGGAGAGGAAGATGCGATACATTGCTGAATTAGAGCACAAAGTGCAAACTCTTCAGACAGAGACAACCACGTTGTCTACTCAGTTTACCAAACTACAGAGGGATAACTCTGAGCTCAAAAATGAGAACAACGAGTACAAATTAAGGCTTCAAGCCATGGAACAGCAGTCTCAGTTGAAAGATGCTCTGAATGAGACCTTGGATGCTGAAGTCCGGCGTTTGAGGCGTGCTGTGGCAGAACTTGGTGGGGAAGCCCTCACGAGTTGCATGGCTCGACAGCTTGCTATTAACCAACAAGTGTTCCAGTTGCAGCATCAGCAGACCGATCAGCACAGCAACTTTCTACTACAAAATCGCCATACCCCGGAAGAGAGAGAGTCTCGGTCACAGCAGATTCAAGGCAATGGATTGCATCCTCAGACACAGATTCAGTCTCAGCAGATTCAAGGCAATGGATTGCATCCTCAGACACAGATGCAGTCCCAGCAGATTCAACGCAATGAATTGCATCCCCAGCCTTGA 1650 0.4545 MEGFDQTGVMHRTSSTAFGAQVPRPPNQKPGIPPSHPNINIPPTSPYPQFSGSSSQRLRSPGSSSHSRSLSQPPFFSLDSLPPLSPSPVATAASLYDSISTTDMAVEESVVSSHAPSPPVALNRGHALQVGLSLPPRKGHRRSSSDSPLGISGFMQSSPPLVNPGCGGENSGKPIQLVLKASIKDRERVDEPVDVRKEDAADDLFSEYMNLDNIDNMNFSGMEDKDLDSRTSGSKTVESSDNEVESHVNGKIGGTQGASSSCSEERREGVKRSSNGDIALGARHRRSFSLDSSIGNFNIEDGLPKFPPLKNQVGQLSPSNSIDGKTSYSSMEFGNGEFSTEELKKIMENDKLAEIAVSDPKRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTETTTLSTQFTKLQRDNSELKNENNEYKLRLQAMEQQSQLKDALNETLDAEVRRLRRAVAELGGEALTSCMARQLAINQQVFQLQHQQTDQHSNFLLQNRHTPEERESRSQQIQGNGLHPQTQIQSQQIQGNGLHPQTQMQSQQIQRNELHPQP. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00953 549 SMART brlzneu 357 421 IPR004827 GO:0003700|GO:0006355
Seca3g00953 549 MobiDBLite consensus disorder prediction 132 157 - -
Seca3g00953 549 Pfam bZIP transcription factor 361 419 IPR004827 GO:0003700|GO:0006355
Seca3g00953 549 SUPERFAMILY Leucine zipper domain 361 417 IPR046347 GO:0003700|GO:0006355
Seca3g00953 549 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 359 422 IPR004827 GO:0003700|GO:0006355
Seca3g00953 549 MobiDBLite consensus disorder prediction 496 549 - -
Seca3g00953 549 Coils Coil 436 460 - -
Seca3g00953 549 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 54 532 - -
Seca3g00953 549 Gene3D - 358 421 - -
Seca3g00953 549 MobiDBLite consensus disorder prediction 45 78 - -
Seca3g00953 549 MobiDBLite consensus disorder prediction 26 44 - -
Seca3g00953 549 MobiDBLite consensus disorder prediction 1 90 - -
Seca3g00953 549 CDD bZIP_plant_RF2 362 434 IPR044759 GO:0003700|GO:0006355
Seca3g00953 549 MobiDBLite consensus disorder prediction 215 278 - -
Seca3g00953 549 MobiDBLite consensus disorder prediction 8 22 - -
Seca3g00953 549 FunFam probable transcription factor PosF21 360 413 - -
Seca3g00953 549 Coils Coil 377 432 - -
Seca3g00953 549 MobiDBLite consensus disorder prediction 504 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00953 Seca-Chr3 15917425 15921260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00953 31 478 bZIP Transcription Factor Family AT4G38900 48.319 2.99e-110 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g00953 bZIP_1 1.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00953 - - gmx:100779731 678.322