Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00947 ATGGCAACAACGGCTATATTTCTCATCTCCATTGCAGTGGTTGCAAACTTCACCTTAACCTCAACCTTTGCACAGAGCAACAACAATGTGAGTCACTCAGAGATCCAAGCCTTAACAGCCTTCAAGCTCAACCTTCACGACCCTCTTGGTTCCTTAGATGGATGGGACCCTTCAACCCCTTCAGCACCCTGTGATTGGCGTGGCATTCTCTGTTTCAAAAACAGAGTTCATGAACTTCGCTTACCTCGTCTTCAACTCACTGGTCCACTCTCTCCTTCTCTCTCTAACCTCTCACAACTTCGCAAACTCAGTCTCCACTCTAACAACTTCAACTCCTCCATCCCTTCCTCTCTTTCCCATTGCTTGTTCCTCCGTGCCGTTTACCTTCACAACAACAAACTCTCCGGCAACCTTCCTCCGCCGCTTCTCAATCTCACCAACCTTCAGATTCTCAACCTCGCTCACAACCTTCTCTCCGGTACAATCCCTGGAAACCTCTCAACCTCCCTCCGGTTCCTTGACTTGTCCTCAAACGCATTCTCCGGCGACATTCCGGCGAACTTCACCTCAAAATCTCAGCTTCAGCTTATCAACTTGTCCTACAATGGCTTCACCGGCGGAATACCTGTCACCATTGGAGCATTGCAACGTTTGGAGTATCTGTGGTTAGATTCCAACAATCTTCATGGAACGTTACCTTCAGCTCTTGCCAACTGTTCCTCACTGGTGCACCTGAGCGCAGAGGATAATGCCATCGGAGGTTTGATTCCGGCCACCATGGGGACCATGCCGAAGCTTCAAGTGCTGTCACTTTCGCTGAATCAACTTTCGGGTTCGGTCCCCACGTCTCTGTTTTGCAATGAACACACGGATTGGTCTCTGCGAATTGTTCAGCTTGGCTTTAATAACCTCACGGGTATTACCAAGCCGCAAAGTGGGGGCAAAAAATGTGTTAGCTTTTTGCAGATTTTGGACCTTAAGGAGAATCACATTATTCGTGCTTCGTTTCCCTTTTGGTTGACCAATGCGACGTCGTTGAGGGTTCTTGATCTTTCTGGAAACTCATTTTCAGGTGTTCTGCCTCCAGATATTGGGAATCTTTTCAGGTTAGAAGAATTGAGATTGTCGAATAATTCATTATCTGGTGGAGTCCCTATTAGTATTGTGAATTGTAGAGTGTTGCGGGTTCTTGATCTTCAGGGGAACAAGTTCTCTGGTCCTGTTCCTTCTTTTCTTGGTCAACTGAGAAGCCTCAAGGTGTTATCTCTTGGTGGTAACCTTTTTACTGGGTCAATACCCACCAGTTATGGGTCACTTTATGAGCTAGAGTCACTGAATTTGAGTAACAATAATCTAACAGGGATTTTGCCTGAGGAGATCATGCAATTAGGGAACATGAGTGCTTTGAATCTCAGCAATAATAGATTTTCTGGCCAAGTTTCTTCTCATATTGGGGACTTGATGGCTTTGCAAGTTCTTAATTTGAGTCACTGTGGGTTTTCAGGAAGGGTTCCCTCTACACTGGGTAATTTGATGAAACTTACAGTGTTGGATTTGAGCAAGCAAAGCCTTTCTGGTGAATTGCCTGTTGAGCTTTTTGGATTACCAAGCTTGCAAGTTGTGGCACTTGAGGAAAACCATTTAAGTGGTGCTGTTCCTGAGGGTTTCAGCAGCATAGTTAGTCTAAGGTACCTTAATCTCACATCCAATGCCTTTGTTGGCAACATTCCAGCTACCTATGGGTTTCTTAGTTCCTTAATTGTTCTCTCTTTGTCTCACAATAGTATTTCTGGTGCAATACCTCCTGAGATTGGTGGTTGTTCTCAACTTGAAATTCTCCAGCTGCAGTCAAATCATTTGCAAGCTAACATTCCTAGTGAAATCTCTAGCCTTTCCCATTTAAAGGAGCTTAATTTGGGGCACAATAGGTTGAAAGGTGATATCCCAGATGAAATATCACAATGTTCATCTTTGACTTCACTCTTATTGGATAGTAATCACTTGACAGGTCAAATACCAGAATCCTTGTCAAAATTATCAAACTTGACTGAGTTGAGTCTTTCTTCAAATCAATTAACCGGTGAAATTCCGGTTGATCTTTCACAAATTGCTGGTTTGAAGTATCTAAACCTATCCAATAACAATCTTGAGGGTGAGATTCCTGAGATGCTTGGTTCAAGATTCAATGACCCTTCTGTGTTTGCAATGAACCAGAGGCTATGTGGGAAACCTTTACATAAAGAATGTGCAAATGTGAGAAGGAGAAAGAGGAGAAGGCTAATAATCTTTATTGGCGTGGCTGTGGCTGGACTTTGTCTTTTGGCATTGTGTTGCTGTGGCTATGTTTACAGTCTCTTAAGATGGCGCAACAAGCTCAGAGAAGGGGTGACTGGTGAGAAGAAACGTAGCCCTGCTAGTGCAGGCTCAGGAACAGACAGAAGTAGAGGGAGTGGTGAAAATGGAGGGCCAAAACTAGTAATGTTCAACAACAAGATCACTTATGCAGAGACATTAGAAGCAACAAGAAACTTTGATGAGGAAAATGTGTTGAGTAGGGGAAGGTATGGACTTGTGTTCAAAGCCTCCTACAATGATGGCATGGTTCTATCCATTCGTCGCCTCCCTGATGCATTCATGGATGAGGGTACTTTCCGCAAAGAAGCAGAATCACTAGGAAAAGTGAAGCATCGCAATTTAACAGTTCTGCGTGGCTATTATGCAGGACCACCACCTGATGTAAGGCTTCTTGTTTATGACTACATGCCAAATGGGAACCTAGGGACATTGCTTCAAGAAGCATCTCAACAAGATGGCCATGTTCTGAATTGGCCAATGCGTCATCTCATAGCACTAGGCATTGCTCGTGGGTTGGCTTTCTTACACTCAGTGCCAATAGTTCATGGTGATGTGAAGCCTCAAAATGTTCTCTTTGATGCAGATTTTGAAGCCCATTTGTCTGAATTTGGGTTGGATAGGTTGACAATGGGAAATCCAGCAGAAGCATCGTCTTCATCTACACCAGTTGGTTCGTTAGGGTATGTAGCACCAGAAGCTGCATTAACAGGACAAGCAACAAAAGAGGCAGATGTATACAGTTTTGGGATTGTGTTGTTGGAAATACTGACAGGGAGGAAACCAGTGATGTTCACACATGATGAGGATATAGTGAAGTGGGTGAAGAGGCAATTACAAAGGGGACAAATTTCAGAATTGTTGGAGCCTGGTTTGCTTGAGCTTGATCCAGAATCATCTGAATGGGAAGAGTTTTTGTTGGGTATCAAAGTTGCTCTATTATGCACAGCACCTGATCCTCTTGATCGACCATCTATCAATGACATTGTTTTCATGCTCGAAGGTTGTCGGGTCGGACCGGAGATACCATCCTCCGCTGATCCCACCACACTACCTTCCCCTACTTGA 3420 0.4421 MATTAIFLISIAVVANFTLTSTFAQSNNNVSHSEIQALTAFKLNLHDPLGSLDGWDPSTPSAPCDWRGILCFKNRVHELRLPRLQLTGPLSPSLSNLSQLRKLSLHSNNFNSSIPSSLSHCLFLRAVYLHNNKLSGNLPPPLLNLTNLQILNLAHNLLSGTIPGNLSTSLRFLDLSSNAFSGDIPANFTSKSQLQLINLSYNGFTGGIPVTIGALQRLEYLWLDSNNLHGTLPSALANCSSLVHLSAEDNAIGGLIPATMGTMPKLQVLSLSLNQLSGSVPTSLFCNEHTDWSLRIVQLGFNNLTGITKPQSGGKKCVSFLQILDLKENHIIRASFPFWLTNATSLRVLDLSGNSFSGVLPPDIGNLFRLEELRLSNNSLSGGVPISIVNCRVLRVLDLQGNKFSGPVPSFLGQLRSLKVLSLGGNLFTGSIPTSYGSLYELESLNLSNNNLTGILPEEIMQLGNMSALNLSNNRFSGQVSSHIGDLMALQVLNLSHCGFSGRVPSTLGNLMKLTVLDLSKQSLSGELPVELFGLPSLQVVALEENHLSGAVPEGFSSIVSLRYLNLTSNAFVGNIPATYGFLSSLIVLSLSHNSISGAIPPEIGGCSQLEILQLQSNHLQANIPSEISSLSHLKELNLGHNRLKGDIPDEISQCSSLTSLLLDSNHLTGQIPESLSKLSNLTELSLSSNQLTGEIPVDLSQIAGLKYLNLSNNNLEGEIPEMLGSRFNDPSVFAMNQRLCGKPLHKECANVRRRKRRRLIIFIGVAVAGLCLLALCCCGYVYSLLRWRNKLREGVTGEKKRSPASAGSGTDRSRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKASYNDGMVLSIRRLPDAFMDEGTFRKEAESLGKVKHRNLTVLRGYYAGPPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLDRLTMGNPAEASSSSTPVGSLGYVAPEAALTGQATKEADVYSFGIVLLEILTGRKPVMFTHDEDIVKWVKRQLQRGQISELLEPGLLELDPESSEWEEFLLGIKVALLCTAPDPLDRPSINDIVFMLEGCRVGPEIPSSADPTTLPSPT. 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00947 1139 FunFam Putative LRR receptor-like serine/threonine-protein kinase 808 920 - -
Seca3g00947 1139 Gene3D Ribonuclease Inhibitor 483 758 IPR032675 -
Seca3g00947 1139 ProSiteProfiles Leucine-rich repeat profile. 441 462 IPR001611 GO:0005515
Seca3g00947 1139 SMART LRR_typ_2 97 121 IPR003591 -
Seca3g00947 1139 SMART LRR_typ_2 344 367 IPR003591 -
Seca3g00947 1139 SMART LRR_typ_2 535 558 IPR003591 -
Seca3g00947 1139 SMART LRR_typ_2 631 655 IPR003591 -
Seca3g00947 1139 SMART LRR_typ_2 583 607 IPR003591 -
Seca3g00947 1139 SMART LRR_typ_2 679 703 IPR003591 -
Seca3g00947 1139 SMART LRR_typ_2 439 462 IPR003591 -
Seca3g00947 1139 SMART LRR_typ_2 415 438 IPR003591 -
Seca3g00947 1139 SMART LRR_typ_2 145 169 IPR003591 -
Seca3g00947 1139 SMART LRR_typ_2 215 239 IPR003591 -
Seca3g00947 1139 SMART LRR_typ_2 263 287 IPR003591 -
Seca3g00947 1139 SMART LRR_typ_2 463 487 IPR003591 -
Seca3g00947 1139 Pfam Leucine Rich repeat 631 646 IPR001611 GO:0005515
Seca3g00947 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 921 1125 - -
Seca3g00947 1139 FunFam Leucine-rich repeat receptor protein kinase EMS1 208 311 - -
Seca3g00947 1139 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 473 753 - -
Seca3g00947 1139 SUPERFAMILY L domain-like 293 577 - -
Seca3g00947 1139 ProSiteProfiles Leucine-rich repeat profile. 705 727 IPR001611 GO:0005515
Seca3g00947 1139 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 294 1117 - -
Seca3g00947 1139 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Seca3g00947 1139 SUPERFAMILY L domain-like 514 743 - -
Seca3g00947 1139 Gene3D Transferase(Phosphotransferase) domain 1 921 1125 - -
Seca3g00947 1139 ProSiteProfiles Protein kinase domain profile. 844 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00947 1139 Gene3D Phosphorylase Kinase; domain 1 818 920 - -
Seca3g00947 1139 Gene3D Ribonuclease Inhibitor 288 482 IPR032675 -
Seca3g00947 1139 Pfam Protein kinase domain 846 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00947 1139 ProSiteProfiles Leucine-rich repeat profile. 633 655 IPR001611 GO:0005515
Seca3g00947 1139 MobiDBLite consensus disorder prediction 797 824 - -
Seca3g00947 1139 PRINTS Leucine-rich repeat signature 679 692 - -
Seca3g00947 1139 PRINTS Leucine-rich repeat signature 442 455 - -
Seca3g00947 1139 Pfam Leucine rich repeat 561 620 IPR001611 GO:0005515
Seca3g00947 1139 Pfam Leucine rich repeat 416 476 IPR001611 GO:0005515
Seca3g00947 1139 Pfam Leucine rich repeat 657 716 IPR001611 GO:0005515
Seca3g00947 1139 SUPERFAMILY L domain-like 32 331 - -
Seca3g00947 1139 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 190 - -
Seca3g00947 1139 SUPERFAMILY Protein kinase-like (PK-like) 823 1128 IPR011009 -
Seca3g00947 1139 Gene3D Ribonuclease Inhibitor 31 187 IPR032675 -
Seca3g00947 1139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 965 977 IPR008271 GO:0004672|GO:0006468
Seca3g00947 1139 Gene3D Ribonuclease Inhibitor 188 287 IPR032675 -
Seca3g00947 1139 FunFam Leucine-rich repeat receptor protein kinase EMS1 336 434 - -
Seca3g00947 1139 Pfam Leucine Rich Repeat 490 511 IPR001611 GO:0005515
Seca3g00947 1139 Pfam Leucine Rich Repeat 345 367 IPR001611 GO:0005515
Seca3g00947 1139 SMART serkin_6 844 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00947 Seca-Chr3 15765574 15768993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00947 1 1138 Receptor kinase-like Gene Family AT1G75640 65.620 0.0 1377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Seca3g00947 Pkinase 2.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00947 - - gmx:100801571 1701.41