Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00943 ATGAAGATCCAGTGCGACGTCTGTAACAAACACGAGGCCTCTTTATTCTGCACAGCCGACGAAGCTGCCTTATGTGACGGCTGCGACCACCGTGTCCACCACGCCAACAAACTCGCCTCCAAACACCAACGCTTCTCTCTCAACCACCCTTCTCCAAAGCATTTCCCTCTCTGCGATGTTTGCCGGGAGAGAAGAGCTTTTGTGTTTTGTGAACAAGATAGAGCGATTTTATGCAAAGAGTGTGACTTGCCGATTCATTCTGCCAACGAACTCACTAAGAAGCATAATAGGTTTCTTCTTACTGGGATTAAGCTCTCTGCTGCTGCTACTCTTTATTCTTCATCACCACCTTCTAATTTCAATTCCAAGTCTTGTGCTGATGACGATGACAACAATAATTCACTTCCACCGTTGATTGCCAAGACTTGTTCTCCCCCTTCAATATCAACGGCGGTGACGTCAGTGCCTCCGAATGAAAAAGAAGGTTTCACAAGTAGCAGCATATCCGAGTACTTGATTAACACTATTCCAGGCTGGCAGTTTGAAGATTTCCTTGATTCGCCTTCTCTTCCCTTTGCTCTCTCTAAGAATAATGGTGATGGTATGTTAGTGAATGGTGGTGATATTGAGAGAAATATGGTTTCGTTCTCGGCAGAGAGCATTGGTGGTACTGGGATCTGGGTTCCTCAAGCACCATCTTCAACACAAATGATTGGATACAGAGAAACAAAGGAAGCCACCAACAACAGATCAAGGTTGAGGGATGATAATTTCATAGTTCCACAGATGAGCCCTCCCAACACTACTACTGCCTCCAAGAGATCCAGACTTTTATGGGGCCATGAGAATGGATTGATGGATGTAAGACAACTAAAAACTAAACGGAGAAAAGGGTGA 897 0.4493 MKIQCDVCNKHEASLFCTADEAALCDGCDHRVHHANKLASKHQRFSLNHPSPKHFPLCDVCRERRAFVFCEQDRAILCKECDLPIHSANELTKKHNRFLLTGIKLSAAATLYSSSPPSNFNSKSCADDDDNNNSLPPLIAKTCSPPSISTAVTSVPPNEKEGFTSSSISEYLINTIPGWQFEDFLDSPSLPFALSKNNGDGMLVNGGDIERNMVSFSAESIGGTGIWVPQAPSSTQMIGYRETKEATNNRSRLRDDNFIVPQMSPPNTTTASKRSRLLWGHENGLMDVRQLKTKRRKG. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00943 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 268 - -
Seca3g00943 298 CDD Bbox1_BBX-like 5 47 - -
Seca3g00943 298 CDD Bbox1_BBX-like 57 100 - -
Seca3g00943 298 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Seca3g00943 298 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Seca3g00943 298 FunFam B-box zinc finger protein 21 1 98 - -
Seca3g00943 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca3g00943 298 Gene3D Classic Zinc Finger 1 96 - -
Seca3g00943 298 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca3g00943 298 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00943 Seca-Chr3 15618693 15621178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00943 1 279 C2C2-CO-like Transcription Factor Family AT1G75540 40.476 4.59e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca3g00943 zf-B_box 4.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00943 - - gmx:100794842 335.88