Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00939 ATGGCTGGGTTGTTCTCTCTAGGTGGAAGGGGAGGCCCACAAAACAAGATAGGAGGAAAAGAAGAAAACAATAACAGTAGTAGCCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGGCTGGAGATATGGCCACAGCCCTATCAGCCACAACACCAAAACTACTATGCGTTTGGGGTGGGTCCTAGTCGCATCAACGTGAACGAGGACGACGTCGTCTCCTCCTCCTCCTTGTGTGTATCTGATGAGTCTATGAGATTTGGATTAACTGTCATGAGGCCTGGAAGTGGCGGCATCAACTGTCAGGACTGTGGCAACCAAGCTAAGAAAGACTGTTCACATCTCAGATGCAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCTGCTGCCAAACGCCGCGAACGACAACAACAACTCGCTGCGTTGCAGCAGCAGCAACAATTGCGGGGAGAGAATCCTAAACGACATCAAGCTGCAGGCACTTCTCTTGCCTGCGCTCCACCACCCATCACTACTACTTCCACAGGGTTAGAGTTGGGGCAATTCCCACCTGAAGTGAGCTCTTCAGCGGTGTTTCGGTGTGTAAAGGTTAGTGCAGTGGACGCTCCAGATGAGCAATGCGCGTATCAAACCACTGTCCACATTGGTGGCCATGTTTTCAAAGGAATTCTATATGATCAAGGTCCAGAAAGTTCTTATACAAGTACAGCTGTTGAGGGTTCCTCCAGTGGAGGTGGAGGTGAAGCTCATCAACAACTTGGTTTCATAACCGCTGCAACTGCAACCACAACCACAGCCACAGGCAGTGGCAATCCATTTGACCCTTCACTTTACCCCGCTTCTCTGAATGCTTTTATGGCTGAGCGCATACATTTCGGTTTTGTGAGACGCAGTGAGCTTTCCATGGCACAGACAGCATTTGGATAG 960 0.499 MAGLFSLGGRGGPQNKIGGKEENNNSSSLLLFRNEEIYNKGLEIWPQPYQPQHQNYYAFGVGPSRINVNEDDVVSSSSLCVSDESMRFGLTVMRPGSGGINCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQQLRGENPKRHQAAGTSLACAPPPITTTSTGLELGQFPPEVSSSAVFRCVKVSAVDAPDEQCAYQTTVHIGGHVFKGILYDQGPESSYTSTAVEGSSSGGGGEAHQQLGFITAATATTTTATGSGNPFDPSLYPASLNAFMAERIHFGFVRRSELSMAQTAFG. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00939 319 NCBIfam LRP1 C-terminal domain 192 240 IPR006511 -
Seca3g00939 319 NCBIfam putative zinc finger domain, LRP1 type 101 143 IPR006510 -
Seca3g00939 319 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g00939 319 Pfam Domain of unknown function (DUF702) 99 241 - -
Seca3g00939 319 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 294 IPR007818 GO:0003700|GO:0006355
Seca3g00939 319 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00939 Seca-Chr3 15443895 15445902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00939 1 298 C2H2 Transcription Factor Family AT1G19790 47.076 1.43e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca3g00939 DUF702 1.9e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00939 - - gmx:100805274 318.546