Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00936 ATGGAAAATGAATGTTGTGTTCTTCCCACGATGGATCTGCTACGATCGGAGCCTATGCAGCTGGTTCAATTGATCATTCCAATCGAAGCAGCTTATCGATCCATCTCGTACCTTGGTGATCTCGGCCTCTTCCAATTCAAAGACCTTAATGCAGACAAAAGCCCATTCCAACGGACTTATGCTGCTCAGATTAAAAGATGTAGCGAAATGGCACGTACGCTACGGTTATTTAAGGAACAAATGACGAAGGCAGGTGTGTCACCCTCAACACGATCAACAAGAGACGGTGATGTTGATGTGGAAAATTTGGAGGTTAAACTTGCAGAACTTGAAGCTGAGCTACTGGAGATTAATGGAAATAACGAGAAGTTGCAACACTCCTACAATGAGCTATCAGAGTATAAGCTTGTTCTAGAGAAGGTTGGTCAGATTTTCTCTTCGGCACAAAATAGTGCTGTAGCTCACCAGAGGGAGATTGAAGTTCAGACAATTGGTGAAGGGTCTATTGGCAGCCCATTATTACTGGAACAAGAGACGACGGCATATCCGTTAAAGCAGGTTAAGCTGGGGTTTATCAGTGGTCTTGTTCCCAGAGAAAAAGCAATTCCTTTCGAAAGAATTTTATTTCGTGCTACTCGGGGAAATGTATTTCTGAAGCAGGCTGTGGTTGCACATCCTGTTCTTGATCCTTTATCAGGAGAGAAGGTTCATAAAAATGTATTTGTTGTATTTTATTCTGGAGAGAGAGTTAAAAGCAAAATTCTGAAAATATGTGATGCTTTTGGAGCGAATCGTTATCCTTTCTCAGATGACTTGGGTAAACAATTTCAGATAATAACAGAGGTGTCAGGGCGACTTTCAGAATTAAAGACAACCATTGATGTAGGATTGCTCCACAGGAGCACTTTGTTGCAGACAATTGGATATCAATTTGAGCAGTGGAGCCTTCTGTTGAAGAAGGAAAAATCCATTTATCACACTCTAAATATGCTAAGCATTAATGTGACAAAGAAATGTCTCCTTGCAGAAGGTTGGTCTCCTGTTTTTGCAACAAATCAGATTCAAAAAGTACTGCAGCGGGCAACTATGGACTGTAACTCTCAAGTTGGGGCGATATTTCATGTTTTACAGACAAAGGAACCACCGCCTACCTATTTTTGCACAAACAAGTTTACTTCTTCTTTCCAAGAAATTGTAGATGCCTATGGAGTTGCCAAGTACCAGGAAGTAAATCCTGGTGTATACACAATCGTTACGTTTCCATTCCTTTTTGCTGTAATGTTTGGAGATTGGGGGCATGGCATATGCTTATTACTGGCGACTTTGTATTTCATAATCAGAGAGAAAAAGTTTTCTTCTCAGAAACTCGGAGACATATTAGAAATGAATTTTGGAGGACGCTATGTTATTATGATGATGGCACTCTTCTCAATCTACACCGGGTTGATATATAATGAATTCTTCTCTATTCCATTTGAACTATTTGGACCATCTGCCTATGGATGCCGTGATCCTTCATGCAGGTGGTTACGAATACAATTTATTCAACATAGTACTTTCTTCTTATGCTGA 1572 0.4027 MENECCVLPTMDLLRSEPMQLVQLIIPIEAAYRSISYLGDLGLFQFKDLNADKSPFQRTYAAQIKRCSEMARTLRLFKEQMTKAGVSPSTRSTRDGDVDVENLEVKLAELEAELLEINGNNEKLQHSYNELSEYKLVLEKVGQIFSSAQNSAVAHQREIEVQTIGEGSIGSPLLLEQETTAYPLKQVKLGFISGLVPREKAIPFERILFRATRGNVFLKQAVVAHPVLDPLSGEKVHKNVFVVFYSGERVKSKILKICDAFGANRYPFSDDLGKQFQIITEVSGRLSELKTTIDVGLLHRSTLLQTIGYQFEQWSLLLKKEKSIYHTLNMLSINVTKKCLLAEGWSPVFATNQIQKVLQRATMDCNSQVGAIFHVLQTKEPPPTYFCTNKFTSSFQEIVDAYGVAKYQEVNPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFIIREKKFSSQKLGDILEMNFGGRYVIMMMALFSIYTGLIYNEFFSIPFELFGPSAYGCRDPSCRWLRIQFIQHSTFFLC. 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00936 523 PANTHER VACUOLAR PROTON ATPASES 13 504 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca3g00936 523 Pfam V-type ATPase 116kDa subunit family 37 503 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca3g00936 523 Coils Coil 93 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00936 Seca-Chr3 15407714 15420713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00936 11 507 Primary Pumps ATPases(2) AT4G39080 72.636 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00936 K02154 - gmx:100805813 847.04