Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00920 ATGTTGAAATCAAGCGTGGGAAAGAAGCCATCTCAGGCCAGTTCCAGAAAGGGATGTATGAGAGGGAAAGGAGGTCCTGAGAATGCAAGCTGCAAATACAAAGGTGTGAGACAGAGAACTTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAACCGTGGGAATCGTCTCTGGTTAGGGACATTCCAAACTTCACATGAAGCAGCCATAGCTTATGATGCTGCTGCACTCAAGCTTTATGGCTCTGCAGCTAAGCTTAATCTCCCAGGTAACCTTGCTGTGTCTCAGTCTCCACCATCCCCTCAGATTCTCCACCAACAACCTCAGATTCATGGAAACGTGGACATGGTTACACCTACCTGTCCTAATTTCAATACCAACACAGAAATCTCCATGGCTTCTCAGCAGGTTGGGGTTGGACCAATCTACACCAACACCAGTGACTCCATCATGTCTCTTCCCAACCCTAAGCCAATTGAGACCTATGCAATTGCAAACCCCATTGAGAACCAGGAGGGTCCTTCTTGGGACACAATGAATGAGGACTTACCAGCTTTGGATGATTCAGTCTGGGCAGAAGCTGCCATGGCCCTTGATTTCCCTCCTGTAATTGCAGACAATGGAATTTACGGAACTGGAGGAAACTTGGCAGATGTAGGAGGGTGGGACTCTCTGAACAATTCTTGGTGCATGTAA 696 0.4799 MLKSSVGKKPSQASSRKGCMRGKGGPENASCKYKGVRQRTWGKWVAEIREPNRGNRLWLGTFQTSHEAAIAYDAAALKLYGSAAKLNLPGNLAVSQSPPSPQILHQQPQIHGNVDMVTPTCPNFNTNTEISMASQQVGVGPIYTNTSDSIMSLPNPKPIETYAIANPIENQEGPSWDTMNEDLPALDDSVWAEAAMALDFPPVIADNGIYGTGGNLADVGGWDSLNNSWCM. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00920 231 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 149 - -
Seca3g00920 231 MobiDBLite consensus disorder prediction 1 31 - -
Seca3g00920 231 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Seca3g00920 231 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Seca3g00920 231 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Seca3g00920 231 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Seca3g00920 231 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Seca3g00920 231 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Seca3g00920 231 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Seca3g00920 231 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Seca3g00920 231 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00920 Seca-Chr3 15205431 15206126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00920 1 209 AP2-EREBP Transcription Factor Family AT1G75490 47.170 1.62e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g00920 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00920 - - gmx:100790057 293.893