Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00910 ATGAGCACCTCCGACGAGTCCTTCCTCATTCGAGATTCAGTTCATGAGATCATTCTGACAACATCGACTTTCTTCTTGACCAACCCTTTTCAATTTGGGGCTACTTCCTATGTCACATACCTCTCACGAGGTTCAAATCCAGGGAATTTTCCATGCAAAATAAATTGTCCAGTTCATTTTGCTTGGCCTATCGTTGCCGACAGAAGAAGACATGAACACCCCTCTTTGAACAGATTCTGGACAACTGTGAGAAATCCCTTCACCTTTGGCATCATCTCCTCTTCTATTGACAATTCTGCACAAGCACCTGCAGTAAGCTCTATTTCCTCCGATTGTAACTGCAAGTTCGAAGATCCACAACCTAAACCTACCAAACATCGACCTCTTGAATCTAACTCCAACACTGACAGTGAGAACAAGCGTCCCTGCCTCAACGACAACGGAGACGACCTAGCTAACGCGAACGATAGATTGTTGAAGCTGAAGAAGAATGAGTGTGAGTATGACCACGAGAAACCAGAATCCGAATTAAAAGATGAAGAAAGCTTCTCGTATGCTGTGCAACTTGGCAACTCTATTGTGCTTCCTATGGCACTCCAATCTGCAATGGAGATGGGCGTATTTGACGTCTTGCAAAAGGCAGGTAGAAGCGCTAAGCTCTCTTCCAAGGAGATTGCGTCTAAGCTTTCCTGCAATAATCCAGAAGCAGCTGCAATGTTAGATCGCGTCCATCTTCATTGTTTATACTCCATCCTATGCGATTGCCTTCAAGGGTTTCAGGTGTGTCATTCGTTGGGAGAAGGAACGGGATCTGGAATAGGAACATTGTTGATTTCGAAAATCAGGGAGGAGTATCCTGATAGGATGATGCTTACTTTCTCAGTCTTCCCTTTCCCTAAGATCTCTCATACTGTTGTGGAGCCTTACAATAACATGCCTAGTGCGCGGAAGCTGTTTGATAAAATGCCAGAAAGCTATGTGAGTATGCAGCAACTGTTTGTTGTCATGCCTGAAAGGGATATAGTTATCTTGTTGTTCTTTTCTTTTCTTTTTGTTAATTTCAATTCATTTGAGAGGGCAGTTTGCATGATTTCAAACTCCACCAGTGTGGCTGAGGTGTTTACTCGTATTGACCACAAGTTTGATCTCATGTATGCCAAGCGTGCTTTTGTCCACTGGTACGTGGATGAGGGTATGGAAGAAGGTGAATTTTCTGAAGCTCGTGAGGATCTGGTTAATAAGGACATTGTTGCTTTGATTGTTATTGACACCTTGCATGAGAGAGATGTTTAA 1293 0.4331 MSTSDESFLIRDSVHEIILTTSTFFLTNPFQFGATSYVTYLSRGSNPGNFPCKINCPVHFAWPIVADRRRHEHPSLNRFWTTVRNPFTFGIISSSIDNSAQAPAVSSISSDCNCKFEDPQPKPTKHRPLESNSNTDSENKRPCLNDNGDDLANANDRLLKLKKNECEYDHEKPESELKDEESFSYAVQLGNSIVLPMALQSAMEMGVFDVLQKAGRSAKLSSKEIASKLSCNNPEAAAMLDRVHLHCLYSILCDCLQGFQVCHSLGEGTGSGIGTLLISKIREEYPDRMMLTFSVFPFPKISHTVVEPYNNMPSARKLFDKMPESYVSMQQLFVVMPERDIVILLFFSFLFVNFNSFERAVCMISNSTSVAEVFTRIDHKFDLMYAKRAFVHWYVDEGMEEGEFSEAREDLVNKDIVALIVIDTLHERDV. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00910 430 Gene3D Helix hairpin bin 370 414 IPR023123 -
Seca3g00910 430 PANTHER TUBULIN 253 327 IPR000217 GO:0005874|GO:0007017
Seca3g00910 430 PRINTS Tubulin signature 258 276 IPR000217 GO:0005874|GO:0007017
Seca3g00910 430 PRINTS Tubulin signature 277 298 IPR000217 GO:0005874|GO:0007017
Seca3g00910 430 PRINTS Tubulin signature 302 315 IPR000217 GO:0005874|GO:0007017
Seca3g00910 430 Gene3D Tubulin/FtsZ, GTPase domain 162 331 IPR036525 -
Seca3g00910 430 MobiDBLite consensus disorder prediction 116 148 - -
Seca3g00910 430 MobiDBLite consensus disorder prediction 118 134 - -
Seca3g00910 430 SUPERFAMILY "Winged helix" DNA-binding domain 178 243 IPR036390 -
Seca3g00910 430 PRINTS Alpha-tubulin signature 371 387 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca3g00910 430 PRINTS Alpha-tubulin signature 156 164 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca3g00910 430 Pfam Tubulin/FtsZ family, GTPase domain 253 320 IPR003008 GO:0005525
Seca3g00910 430 Pfam Dimerisation domain 197 242 IPR012967 GO:0046983
Seca3g00910 430 FunFam Caffeic acid 3-O-methyltransferase 165 262 - -
Seca3g00910 430 SUPERFAMILY Tubulin C-terminal domain-like 294 412 IPR008280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00910 Seca-Chr3 15153887 15156215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00910 176 252 Monolignol Biosynthesis Gene Families AT5G54160 44.872 9.88e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00910 K07375 K07374 oeu:111365274 151.754