Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00906 ATGTATCCCGATCAAGCCTTTTCTTCAGGGTCCTATGCGGAGATGTTGTCCGGCAATCACCTATTACCTCATAATTACAATGAATCTGTTGGAGGACAAAATGAGGCAAAGTTTATCACTGCTATGGGTGACACAGTGACTATTCAGTCAATTGATGGGCATTCCAATGCTGCAACTGGTGATCCAGCATGCAATTCCCATGTTAGTGAGCAAAATATACAGTGCCAGGGTTTATCTCTTAGTCTTGGGACACTAATGCCTTCTACTGCATCTGTCCCTCAGTTTCAATACCAGTATTCAGACACTGGTCTCTTACCTTTAATGACTTCTTGTCTCCCAAACTTAAAGGGAACTATATCCTTCAAAGATGATGAGACCAACCTACATAAGGAGTTGAGAAGTGCTGAATGCATGGCATCTGTATCTTCTGGAGGTTTTCATGATATTATCAAAAAGGATGGTTTTTACAACCCTCACCCTTCTGATCCATGCTTGCAAGGATCATCAGGTTTTTCAAACAATATCCTGAACTCCAGATACCTTAAGGCCTCACAGGAGTTACTTGATGAAATAGTTAATGTCCGAAAGGCTTTGAAGCAACATGAGAAACAAGAAAAACTCCGTGACATTGGATTAGATGGTTCCAAAGATTCTGATGGAAAATCTACCAGTCAATCTATGCAAATATCTTCAGGCCCTAATGGTTCTACCACAAATCCTTCTTGTGAACTATCACCTGTAGAAAGGCAGAATTTGCTGGATAAGAAGACAAAGCTTTTGGCAATGTTGGATGAGGTAGATAAAAGATACAGACAATACTGCCATCAGATGCAGATTGTGGTATCATCCTTTGATATGGTAGCTGGGTGTGGAGCAGCAGAACCATATACCACACTTGCTCTGAGAACAATTTCACGGCACTTTCGCTGTTTGCGTGATGCTATCAGTGGCCAAATTCAAGTGACACAAAGGAGCCTTGGGGAACAAGAGGGAATACCACGTCTCCGCTATGTGGATCAGCAGCTTAGACAACAAAAGGCCCTTCAGCAGCTTGGTGTAATGAGACAAGCTTGGAGGCCTCAAAGGGGTCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCTTACCCCAAGGATTCAGAGAAAATAATGCTAGCAAGGCAAACTGGCTTGACCCGAAACCAGGTGGCAAATTGGTTCATCAATGCACGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAAAGAAGAGTTTGGTGATTCCTGCAATATTTCATCTGAAAATACACTGAAAGGTAAAAGAGATGATGTTCAAGAGTCTGATAATAAATGGGAAGTGTCCAACTTCATGGTTTGA 1386 0.4221 MYPDQAFSSGSYAEMLSGNHLLPHNYNESVGGQNEAKFITAMGDTVTIQSIDGHSNAATGDPACNSHVSEQNIQCQGLSLSLGTLMPSTASVPQFQYQYSDTGLLPLMTSCLPNLKGTISFKDDETNLHKELRSAECMASVSSGGFHDIIKKDGFYNPHPSDPCLQGSSGFSNNILNSRYLKASQELLDEIVNVRKALKQHEKQEKLRDIGLDGSKDSDGKSTSQSMQISSGPNGSTTNPSCELSPVERQNLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSCNISSENTLKGKRDDVQESDNKWEVSNFMV. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00906 461 CDD homeodomain 358 419 IPR001356 GO:0003677
Seca3g00906 461 Pfam Homeobox KN domain 375 414 IPR008422 GO:0003677|GO:0006355
Seca3g00906 461 Gene3D - 355 433 - -
Seca3g00906 461 SMART HOX_1 358 422 IPR001356 GO:0003677
Seca3g00906 461 FunFam BEL1-like homeodomain protein 4 361 423 - -
Seca3g00906 461 SUPERFAMILY Homeodomain-like 359 426 IPR009057 -
Seca3g00906 461 SMART prehox3 169 317 IPR006563 -
Seca3g00906 461 ProSiteProfiles 'Homeobox' domain profile. 355 418 IPR001356 GO:0003677
Seca3g00906 461 MobiDBLite consensus disorder prediction 217 244 - -
Seca3g00906 461 Coils Coil 184 204 - -
Seca3g00906 461 MobiDBLite consensus disorder prediction 203 244 - -
Seca3g00906 461 Pfam Associated with HOX 175 316 IPR006563 -
Seca3g00906 461 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00906 Seca-Chr3 15088660 15093486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00906 33 434 Homeobox Transcription Factor Family AT1G19700 49.881 2.56e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca3g00906 POX 2.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00906 - - gmx:100791641 721.465