Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00905 ATGTCCAACTCTATTACCCATCATCAAAACCAATTTGAGAACCAAGAGCTTGATGCTTATGGCTCTTCTCTAAGGAACAATAATGCATTTGGTGATGCCTTAGGAGCATTTCCCAGCATTCAATCTATTGGAGACAGAATATCAAGATCAATGGACCTTGTGCAAGCTCCTGTACTATCTGAGGGGTCTGAAATGAGCCACACAAGGCACTTGATGGATCTTCTTGGTGCAGCTAATGAGAACAATCACCACCAACCTCAACCCCTCTCTCTCTCTTTAGGCTCTCACATGCTTGTCCCTTCTGATGAATACAGAAACCGATCCTTAAATCCAGGTCTCATGAACCCCAATTACTTCATTCCTGGACAAGAGGCACGTGAAGGTTGTAATCCACCAGTGGAGCATCTAACCAGTGACTATTTCTTCACCAGTGGTGGTGGCAGTGGCACTTTTGCTTCATCTTCTGCCTCATTGAACCGTTCTCCTTCCACCTCCTATGGAGTGGAGTCTTTTGCTTCTGTCATTGGGAACTCAAGATACCTCAAACCAGTTCAGTCCCTTCTTGAAGACCTTGTTGATGTTGGTGGAAGTGTGATTGATAGGATCAATGAAAAGTATGCAGAGAAGTTGTTATTTCAAGGGAGTAGAACAGGAGCATGTGCTAGAACTCTTTCCTCTGAGCTAAAAGCAGAGTTGAGGAATAATGGACATTTATTGGCTGACAAACATGAACATCAAATGAAAATTGCAAAGTTGATTTCTTTGTTGGATGAGGTTGAGAGTAGGTATGAGAAATACTACCATCAAATGGAAGAAGTAGTGTCATCCTTTGAAATGATAGCAGGTCTTGGAGCTGCCAAGTGTTACACTGCTTTGGCACTCCAAGCTATGTCTAGGCATTTCTGCACCTTGAGAGATGCCATAGTGTCACAAATAAATGTGGAGAAAAGAAAACTCTTTCAGGATTTACCTAAAATCAGTAGTGGATTCTCTCAACTAAGCTTATTTGATAGAGATACTAGACAGAGTAGAATGTCTCTTCAACAGCTTGGAGTGATCCAAAGCCAACGGCAAGTATGGAGACCCATCAGAGGGTTACCTGAAACCTCTGTAGCAATTCTTCGTTCTTGGCTTTTTGAGCACTTTCTCCACCCTTACCCTAATGATTCTGAAAAGTTAATGTTGGCATCCCAGACAGGTTTATCTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTAGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGACTCTTCAGAAGACTCCAACCCGGCTGCTAACAACTACTTAACAAGGGAGGATATCACTGATTGTGTGGAGGATTGA 1371 0.4216 MSNSITHHQNQFENQELDAYGSSLRNNNAFGDALGAFPSIQSIGDRISRSMDLVQAPVLSEGSEMSHTRHLMDLLGAANENNHHQPQPLSLSLGSHMLVPSDEYRNRSLNPGLMNPNYFIPGQEAREGCNPPVEHLTSDYFFTSGGGSGTFASSSASLNRSPSTSYGVESFASVIGNSRYLKPVQSLLEDLVDVGGSVIDRINEKYAEKLLFQGSRTGACARTLSSELKAELRNNGHLLADKHEHQMKIAKLISLLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCTLRDAIVSQINVEKRKLFQDLPKISSGFSQLSLFDRDTRQSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLSKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPAANNYLTREDITDCVED. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00905 456 CDD homeodomain 360 421 IPR001356 GO:0003677
Seca3g00905 456 Gene3D - 355 435 - -
Seca3g00905 456 ProSiteProfiles 'Homeobox' domain profile. 379 420 IPR001356 GO:0003677
Seca3g00905 456 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 438 - -
Seca3g00905 456 SMART HOX_1 360 424 IPR001356 GO:0003677
Seca3g00905 456 Pfam Homeobox KN domain 377 416 IPR008422 GO:0003677|GO:0006355
Seca3g00905 456 SMART prehox3 169 310 IPR006563 -
Seca3g00905 456 Pfam Associated with HOX 174 309 IPR006563 -
Seca3g00905 456 SUPERFAMILY Homeodomain-like 366 428 IPR009057 -
Seca3g00905 456 MobiDBLite consensus disorder prediction 429 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00905 Seca-Chr3 15084168 15087424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00905 168 455 Homeobox Transcription Factor Family AT2G16400 49.495 7.52e-84 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca3g00905 POX 3.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00905 - - gmx:100792161 707.212