Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00900 ATGGCATCGTCCAGTGGAAACTCCTCCAAAACTCAGAGCTCTGGCTCTGAAGAGGATTTGCAGATTCTGATGGATCAAAGGAAAAACAAGAGAAAGCAATCGAATCGTGAATCAGCAAGAAGATCTCGGATGAGGAAGCAGAATCACTTGGAAGATCTGACGAACCAGGTGTCTAAGCTCACAAAGGACAACGGTGAAATCCTCACAAACATAAACATCACAACACAGCACTATCTGAATGTTGAGGCAGAGAATTCCATTCTGAGGGCCCAGATGGGGGAACTTAATCAAAGGCTTCAATCACTAAATGATATCCTCAGTTTCATTAAGACAAACACTGGGTCCTATGAAAGGGATTGTTATCAAACAAGTGAACAAAATTGCATGAATATGCTCTATCTTAACCAGCCCATTATGGCTTCTGCAGACATCTTTCAGTGGTGA 444 0.4234 MASSSGNSSKTQSSGSEEDLQILMDQRKNKRKQSNRESARRSRMRKQNHLEDLTNQVSKLTKDNGEILTNINITTQHYLNVEAENSILRAQMGELNQRLQSLNDILSFIKTNTGSYERDCYQTSEQNCMNMLYLNQPIMASADIFQW. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00900 147 CDD bZIP_plant_GBF1 28 78 IPR045314 GO:0003700|GO:0006355
Seca3g00900 147 FunFam BZIP transcription factor 25 76 - -
Seca3g00900 147 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 30 45 IPR004827 GO:0003700|GO:0006355
Seca3g00900 147 SMART brlzneu 23 87 IPR004827 GO:0003700|GO:0006355
Seca3g00900 147 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g00900 147 Coils Coil 36 70 - -
Seca3g00900 147 PANTHER BZIP TRANSCRIPTION FACTOR 44 5 144 - -
Seca3g00900 147 Gene3D - 25 108 - -
Seca3g00900 147 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 25 88 IPR004827 GO:0003700|GO:0006355
Seca3g00900 147 Coils Coil 78 105 - -
Seca3g00900 147 SUPERFAMILY Leucine zipper domain 27 80 IPR046347 GO:0003700|GO:0006355
Seca3g00900 147 Pfam bZIP transcription factor 27 77 IPR004827 GO:0003700|GO:0006355
Seca3g00900 147 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00900 Seca-Chr3 15019311 15019754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00900 23 147 bZIP Transcription Factor Family AT4G34590 54.015 2.33e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g00900 bZIP_1 1.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00900 K25786 - rcu:8275772 180.644