Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00897 ATGAAAATCTTGGGCGGTTTGAAGCAGTTTTCGATTCTAATCAGAGTTCAATGGTTGGGAAGTTATAATGACAACGACAGAGCTGCTCTTGTGAAGAACCCTTTGGTTATTTCGGCTCAATTTATTCATGTTGTTATTCCTGAAGACCAAGAACTTCAACATCATGAAAGGGGCTTAAAATATGAATGTGTGTTGAAATGGTATCATAGGAGGGCTACAGAGTGCTATGTGTCCCAGGGATGGTATCAATTTTGTTGTCAGAAACGGTTGTCCAAGGGTGATACATTGAAGTTTTGGTTTGTGAACAATGATCCTAAGAATCTCCATGTTCGTGTTTATGATGGTTAA 348 0.3879 MKILGGLKQFSILIRVQWLGSYNDNDRAALVKNPLVISAQFIHVVIPEDQELQHHERGLKYECVLKWYHRRATECYVSQGWYQFCCQKRLSKGDTLKFWFVNNDPKNLHVRVYDG. 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00897 115 Gene3D - 15 114 IPR015300 -
Seca3g00897 115 Pfam B3 DNA binding domain 33 114 IPR003340 GO:0003677
Seca3g00897 115 SUPERFAMILY DNA-binding pseudobarrel domain 35 112 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00897 Seca-Chr3 14934324 14935692 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g00897 B3 1.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00897 - K03860 psat:127080863 37.7354