Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00894 ATGGCTACTCCTGTTGAGCCTCCAAATGGGATCAAAACTGAAGGAAAGCATTACTATTCCATGTGGCAAACCCTGTTTGAGATTGACACAAAATATGTGCCCATCAAGCCTATTGGTCGTGGAGCCTATGGAATTGTGTGCTCTTCTGTGAATAGAGAAACCAATGAGAAAGTTGCAATCAAGAAGATACAAAATGCCTTTGAGAATCGTATTGATGCACTCAGAACTTTGCGTGAACTGAAACTTCTTCGCCACCTTCACCATGAAAATGTGATTGCTTTGAAAGACATCATGATGCCTATTCATAGGAATAGTTTCAAGGATGTCTATCTGGTCTATGAACTCATGGACACCGACTTGCATCAGATTATTAAGTCTTCTCAAGCACTGTCTAATGATCACTGTCAATATTTCCTCTTTCAGTTGCTTCGGGGCTTGAAATACCTTCACTCAGCTAACATCCTTCATCGTGACTTGAAACCTGGGAATCTCCTAATCAATGCAAATTGTGACCTAAAAATATGTGATTTTGGGTTAGCACGCACTAACTGCAGCAAGAACCAGTTCATGACTGAGTATGTTGTCACTCGGTGGTATAGGGCACCAGAGCTTCTACTTTGCTGTGACAACTATGGGACTTCTATTGATGTATGGTCAGTGGGATGCATCTTTGCAGAGCTTCTTGGACGAAAACCTATTTTCCCGGGCTCAGAGTGCCTCAACCAGCTAAAACTGATTGTCAATATCCTTGGTAGTCAAAGGGAGGAGGATATTGAATTTATTGATAATCCAAAGGCAAAGAAGTATATCAAATCACTTCCATATTCTCCTGGGGCTCCCTTTTCCCGACTTTACCCCAATGCCCATCCATTAGCAATTGATCTGCTGGCAAAGATGCTTGTTTTCGATCCCACAAAGAGGATTACTGTCAATGAAGCGCTTCAACACCCTTACATGGCACCTTTGTATGATCCTAGTTGTGACCCTCCAGCTATCATTCCAATTGATCTTGAGATTGATGAGGATCTAGGGGAAGAGATGATAAGGGAGATGATGTGGAAGGAGATGCTTCATTACCATCCTGAATCTGCTATGGAAAGTGCAGAGTTGTGCTCATGA 1119 0.4227 MATPVEPPNGIKTEGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKKIQNAFENRIDALRTLRELKLLRHLHHENVIALKDIMMPIHRNSFKDVYLVYELMDTDLHQIIKSSQALSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTNCSKNQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGSECLNQLKLIVNILGSQREEDIEFIDNPKAKKYIKSLPYSPGAPFSRLYPNAHPLAIDLLAKMLVFDPTKRITVNEALQHPYMAPLYDPSCDPPAIIPIDLEIDEDLGEEMIREMMWKEMLHYHPESAMESAELCS. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00894 372 SUPERFAMILY Protein kinase-like (PK-like) 24 325 IPR011009 -
Seca3g00894 372 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Seca3g00894 372 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Seca3g00894 372 FunFam Mitogen-activated protein kinase 18 126 - -
Seca3g00894 372 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00894 372 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca3g00894 372 CDD STKc_TEY_MAPK 26 361 - -
Seca3g00894 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Seca3g00894 372 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Seca3g00894 372 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00894 372 FunFam Mitogen-activated protein kinase 116 345 - -
Seca3g00894 372 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00894 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00894 Seca-Chr3 14911858 14914786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00894 1 370 MAP Kinase Gene Family AT1G10210 85.405 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca3g00894 Pkinase 1.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00894 K20535 - gmx:100798863 723.005