Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00892 ATGTCAAAATCTCTGGAACTACCTGATTGTATCTATATTCCTGGCCAACCAGTAACTATTCCCCCAAGTGCTCCAACACCAAAGCATTCCCTCTACCTCTCTAATCTTGATGACCAAAAGTTCCTGAGATTCTCCATTAAGTATTTGTACCTCTTCAAGAAATCAGTGAGCTTGGATATCTTGAAATCTTCTCTGTCCAGAGTTTTAGTGGATTATTACCCCTTAGCTGGGAGGTTGAGGACAAGCTCTGTGGATGATCACAAGCTTGAGGTGGATTGCAATGGAGAAGGTGCTGTCTTTGCTGAGGCTTTCATGCCAATCACTGCTGAAGAATTACTTGAACCTTCCAAGATTCCAAACAAGTCATGGAAGAAATTCTTGTATAAGGTGGAAGCTCAGAGTTTCATAGATGTTCCTCCTCTTATAGTCCAGATAACCAGTCTCCGTTGCGGGGGAATGATCCTGTGCACCGCAATCAACCACTGCATATGCGACGGCATAGGCACGTCTCAGTTCTTACACGCTTGGGCGCAACTCACCACTACGCCTGAAGCGGAATTGACCATCCTACCCTTCCATTGGCGCCACGTGCTGAAACCCAGAGACCCCCCTGTGGTAAAGTTCCGTAGTCCTGGATACACCGTAACAAACCCAATTCCTCAAGTGGAACTTCTCAAGTTCCTACAGTCACAGCCGTTAGTTCCCACATCCTTCACCTTCAGCCCCTCCCACGTCCTTCTCCTGAAGAAACAGTGCGTTCCGTTACTCAAATGCACCACCTTCGAAGCGCTCGCGGCACACACGTGGCGCTCGTGGATTCGATCACTGGACCTAACCTTACCTTCCAACCTCGTTGTGAAACTCCTTTTCTCAATTAACATTCGCACAGCAGTGAACCTACCAAAAGGGTATTATGGAAATGGGTTCCTGCTAGGATGCGCCGAAAGTAGCGTAAAGGAGTTAGTGGAAGGTGATAACCTGCGCCACGGTGTGAGGGTAGTGCAGGAAGCGAAGGCAAGGGTGAATGATGAGGAGTACGTGAGGTCAATGGTTGATTTGTTGGAGGACAAAAGGGTAAAAACAGATCTTACGACTAGTTTGGTTATATCACAATGGTCGAGGTTGGGATTGGAGGAAGTGGATTTTGGAGAGGGGAAAGCATTGCAAATGGGTCCTTTAACGAGTGATATTTACTGCTTGTTTTTACCAGTAATGGGTGATGCTAATGCGGTGAGAGTGCTTGTGTCAGTGCCGGAGAGTATGGTCGAAAGTTTTCACTATCACATGAAAGAAAGCTGCAGGGAAAAAGAAAATGGAGATGTTAAGAATGGGTATCGTGCGCATCAAAATGGATTCTTCTGA 1362 0.4662 MSKSLELPDCIYIPGQPVTIPPSAPTPKHSLYLSNLDDQKFLRFSIKYLYLFKKSVSLDILKSSLSRVLVDYYPLAGRLRTSSVDDHKLEVDCNGEGAVFAEAFMPITAEELLEPSKIPNKSWKKFLYKVEAQSFIDVPPLIVQITSLRCGGMILCTAINHCICDGIGTSQFLHAWAQLTTTPEAELTILPFHWRHVLKPRDPPVVKFRSPGYTVTNPIPQVELLKFLQSQPLVPTSFTFSPSHVLLLKKQCVPLLKCTTFEALAAHTWRSWIRSLDLTLPSNLVVKLLFSINIRTAVNLPKGYYGNGFLLGCAESSVKELVEGDNLRHGVRVVQEAKARVNDEEYVRSMVDLLEDKRVKTDLTTSLVISQWSRLGLEEVDFGEGKALQMGPLTSDIYCLFLPVMGDANAVRVLVSVPESMVESFHYHMKESCREKENGDVKNGYRAHQNGFF. 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00892 453 Gene3D - 221 431 IPR023213 -
Seca3g00892 453 Gene3D - 15 215 IPR023213 -
Seca3g00892 453 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 425 - -
Seca3g00892 453 Pfam Transferase family 19 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00892 Seca-Chr3 14879950 14883429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00892 22 392 Monolignol Biosynthesis Gene Families AT5G48930 28.283 3.72e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00892 - - gmx:100810619 716.457