Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00891 ATGGAATCTAACAATCTCCATCACCTCCAAGACCAACCTCTTGAAGCTTCTTCTTCTAATTTATCTACCCCATCCTCTTGCAGCTATGGTGGAACCACCCATTCTTGGACTCCAAATATCACTTTGAATGCAGGTAACAACTTCAACCTCCAAGAAGCTAATCACAGATCAAGAGCTCCAATGATCCAAGATTTAGGTTATCATCACAATCACTGGACAAGTGATGCAGAAAGCTGCTGCTTGACCAGCAACAACAACAACAACCAGTTTTCCAAGATTAAGGAAGAGATCTCTGTTGCTAATTTCCCTCACAAATTCAGTGATATGCTAAACAACAGCATGGAAGGCTATGGACTAATCCCTTCCACCACTTCCACAACAACACAGATCATGAAGAGTAATATTGATCAACACAAAGATAATAATATGAATGCTGCTCTCAGTGACAAGCTCTTGCTCAAGACACTTTTTTCTGGAGACTTGTACTCCACTACTACTAGTCCTCAAAATTATCCTAATAGTAATTTTGGTACTGGTGGAACTAGTAGAGGGAACTTTAGCCAGATTTACCCCAGTATAAATATCTCAAACTTGAATCACTCTTCAAGCTCCTTGGATATGAGAACACAGTCCTTAGATCTATTAACCTCACCAACATCATTTACTTCAGCTAATTCACAAGATCAGAGTAGATTTACTGATAACCTTTCTTTTGGTCTTCAACAAATGCAGCATCCCTTTGACAGGTCCTCCACCACTAACTCTAGTAATGTATCACAATTCACCAATGGCATGGCGGAAACAAAGAGATCCTGCACTTTGATGGAGTCAAAGGTTTCTCAATCTCAAAATGCGGCATCTAAGAAATCACGATTGGAATCATCACGCCCTTCATGTCCACCCTTTAAGGTTAGGAAAGAGAAACTAGGAGATAGGATTGCGGCTCTTCAGCAGTTGGTGGCTCCTTTTGGCAAGACAGACACAGCATCCGTACTCATGGAAGCTATTGGATACATTAAATTCCTTCAAGGCCAAGTCGAGACACTGAGCGTTCCATACATGAAGTCATCTCAGAACCAGACCAACAGATCACTGATGCAAGGGGGTAATTCAGAGGCAAATGGGGAGGCAAAGCAAGATCTTAGAAGCCGAGGCCTGTGTCTGGTGCCTTTGTCATGCATGTCCTACATAGCAGGTGATGGCGGTAGTGACGTGTGGCAACAGCCAAACTTTGGTAGACCAACTTAG 1248 0.4239 MESNNLHHLQDQPLEASSSNLSTPSSCSYGGTTHSWTPNITLNAGNNFNLQEANHRSRAPMIQDLGYHHNHWTSDAESCCLTSNNNNNQFSKIKEEISVANFPHKFSDMLNNSMEGYGLIPSTTSTTTQIMKSNIDQHKDNNMNAALSDKLLLKTLFSGDLYSTTTSPQNYPNSNFGTGGTSRGNFSQIYPSINISNLNHSSSSLDMRTQSLDLLTSPTSFTSANSQDQSRFTDNLSFGLQQMQHPFDRSSTTNSSNVSQFTNGMAETKRSCTLMESKVSQSQNAASKKSRLESSRPSCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQNQTNRSLMQGGNSEANGEAKQDLRSRGLCLVPLSCMSYIAGDGGSDVWQQPNFGRPT. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00891 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 169 395 - -
Seca3g00891 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 356 IPR036638 GO:0046983
Seca3g00891 415 MobiDBLite consensus disorder prediction 275 303 - -
Seca3g00891 415 CDD bHLH_AtbHLH_like 300 350 IPR045239 -
Seca3g00891 415 Gene3D - 303 367 IPR036638 GO:0046983
Seca3g00891 415 FunFam Transcription factor bHLH123 family 303 365 - -
Seca3g00891 415 MobiDBLite consensus disorder prediction 1 28 - -
Seca3g00891 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Seca3g00891 415 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00891 Seca-Chr3 14815030 14820089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00891 26 396 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 38.761 3.41e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00891 - - mtr:25490216 442.195