Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00862 ATGGCGTCAAACTCGGTTTGGACGGCAAAGCAGAACAAAAGATTTGAGAATGCGTTGGCGATCTATGATGAGGGCACTCCAGATCGGTGGCAGAAACTGGCGAGAGCCGTCGGAGGGAAGACGGTTGAGGAAGTGAAAAGGCATTATGAGAAGCTTGTCGAAGACGTTAAGCAGATCGAGGAAGGCCACGTGCCCCTGCCTAATTACCGAAATGTTGTTGCAACTGTTGGAGTTGGAGGCCACACCATCAAAGGTTACAGTTACATGGATGAAGAAAAAAGGATGAAGGCTCTAAGTCTCCAGTGA 306 0.4902 MASNSVWTAKQNKRFENALAIYDEGTPDRWQKLARAVGGKTVEEVKRHYEKLVEDVKQIEEGHVPLPNYRNVVATVGVGGHTIKGYSYMDEEKRMKALSLQ. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00862 101 FunFam Transcription factor SRM1 1 66 - -
Seca3g00862 101 Gene3D - 1 66 - -
Seca3g00862 101 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
Seca3g00862 101 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Seca3g00862 101 CDD SANT 7 53 IPR001005 -
Seca3g00862 101 Pfam Myb-like DNA-binding domain 6 52 IPR001005 -
Seca3g00862 101 SMART sant 3 55 IPR001005 -
Seca3g00862 101 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 71 IPR044636 GO:0003700
Seca3g00862 101 Coils Coil 42 62 - -
Seca3g00862 101 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00862 Seca-Chr3 14360407 14361179 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g00862 Myb_DNA-binding 1.8e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00862 - - gmx:100804049 165.236