Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00839 ATGACCCAACCTCAGACTCAGAGTCAAAATCCTTCACCAATGCCACTCTCTACTTCTACCGGAGAAGAAGCCCCTACCTTCTCCATATCCTCCGCGCCTCAACCACCTAAAAAGAAGCGAAGCCTCCCTGGAATTCCAGATCCGGATGCTGAGGTGATTGCTTTGTCACCAGAGACTCTGTTAGCGACGAACCGTTTCGTGTGTGAGATCTGCAACAAAGGATTCCAACGCGATCAGAACCTGCAGCTTCACCGGCGAGGACACAACCTCCCGGGGAAGCTCCGGCAGCGATCGACCAAGGAAATCCGAAAGAAAGTTTACGTGTGTCCCGAACCTTCCTGTGTTCACCACAACCCGTCCAGAGCGCTGGGTGACCTCACCGGCGTGAAGAAGCACTTTTGCAGAAAACACGGCGAAAAGAAGTGGAAATGTGAACGTTGCTCCAAGAAATACGCCGTACAGTGCGATTGGAAAGCTCATATGAAAACTTGCGGAACTAGAGAGTACAAATGTGACTGCGGCACCGTCTTCTCTAGGAAGGATAGTTTCATCACACACAGAGCTTTTTGCGATGTTTTAGCTAAAGAGAGTGCCAAGGCACAAGCCGTAGCTGTTAGCAACGTTGTTGTGGCTTCTTCGCCTCCTACGCCTCCACTTACTCCCTCTACATCTGTGGTGTCTCCAACTCTGTCCATTCAGAGCTCAGTGGCATCAGAAATTCCAGAAAACCCAAAGACGCATTCGCTGCCGTCTTCGAACGCAACGTGTTTAGTGAATACTGTCACAACCGACGCCTCTTTCAGTTCTACTAGCAGTGTTATTGCGAGTGTGTTGGCCCCCTCCTCAACAGTGACGACTCCTTCTTCTCCATTATTCTCCAATCTCATGTCAAGCTTGGTTCGCTCGGATTGCCCTGTCATAGAGCCCACATCCCTCTCTCTCTCATCACCACTCTATCTCTCCAACAACATCGACCCATCCTTATTCCCGGATCAACATGACCCTCGCCACTACCATGCACCTCCACAACCTGCAGCATTGTCTGCAACCGCTTTACTCCAAAAGGCAGCTCAAATGGGCGCATCCAATTCATCCTTGCTGCGGGGTTTGGGCTTAGCAACAGCGCCTGTTTCCTGTGGGAAAGATAACAGTGTACAATGGAATGGCCTCGTCCATGTAAAGCAAGAGAATCCCTCGGAGGCAGATAATCATCTTGGTCTTGGACTTCCATGTGGGAATGGGTGTTTGGTAGATGGGATGATGGGCTCCTCTGGTCAGCCCATGACTCGTGATCTTCTTGGGCTAAGCATGGGTAGCGGGGGTGGTCTTACAGCTTTGCTAACCTCTTTTGGAGGAAACTTGGATTCATCCGGTGACGGAGGAGTTCGCCAGTAG 1395 0.509 MTQPQTQSQNPSPMPLSTSTGEEAPTFSISSAPQPPKKKRSLPGIPDPDAEVIALSPETLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPGKLRQRSTKEIRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFCRKHGEKKWKCERCSKKYAVQCDWKAHMKTCGTREYKCDCGTVFSRKDSFITHRAFCDVLAKESAKAQAVAVSNVVVASSPPTPPLTPSTSVVSPTLSIQSSVASEIPENPKTHSLPSSNATCLVNTVTTDASFSSTSSVIASVLAPSSTVTTPSSPLFSNLMSSLVRSDCPVIEPTSLSLSSPLYLSNNIDPSLFPDQHDPRHYHAPPQPAALSATALLQKAAQMGASNSSLLRGLGLATAPVSCGKDNSVQWNGLVHVKQENPSEADNHLGLGLPCGNGCLVDGMMGSSGQPMTRDLLGLSMGSGGGLTALLTSFGGNLDSSGDGGVRQ. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00839 464 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 437 IPR031140 -
Seca3g00839 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Seca3g00839 464 Pfam Zinc-finger of C2H2 type 66 88 - -
Seca3g00839 464 Gene3D Classic Zinc Finger 135 202 - -
Seca3g00839 464 MobiDBLite consensus disorder prediction 1 50 - -
Seca3g00839 464 Gene3D Classic Zinc Finger 47 113 - -
Seca3g00839 464 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Seca3g00839 464 SMART c2h2final6 142 162 IPR013087 -
Seca3g00839 464 SMART c2h2final6 66 88 IPR013087 -
Seca3g00839 464 SMART c2h2final6 107 137 IPR013087 -
Seca3g00839 464 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Seca3g00839 464 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Seca3g00839 464 MobiDBLite consensus disorder prediction 1 35 - -
Seca3g00839 464 FunFam protein indeterminate-domain 12-like 45 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00839 Seca-Chr3 14010131 14013056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00839 37 449 IDZ Gene Family AT5G66730 49.683 1.53e-126 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g00839 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00839 K25869 - gmx:100818095 507.294