Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00819 ATGAATGCAGATGCGTCCAAGGAAGTGAATTTGCTGGGAAGAATCAATCATTTCAACCTCATAAAGCTGAAAGGTTATTGCAAAAACGATGGCTTCTTCTGTCTTGTTTCTGAATACATGGCAAATGGCTCTTTAAGAGAATGGCTTGGTAAAAGTGGGTCCACAGAGCACAATAGTTGGGCAAGAGGATCCATATTGCTCTGGATATTGCCAATGGACTTGAGTATCTTCACAACTTCACAGAGCCTTGCTATGTGCACAAGGGTATTAGCACAGACAATATTCTGCTAA 291 0.4124 MNADASKEVNLLGRINHFNLIKLKGYCKNDGFFCLVSEYMANGSLREWLGKSGSTEHNSWARGSILLWILPMDLSIFTTSQSLAMCTRVLAQTIFC. 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00819 96 Pfam Protein tyrosine and serine/threonine kinase 4 85 IPR001245 GO:0004672|GO:0006468
Seca3g00819 96 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 61 - -
Seca3g00819 96 SUPERFAMILY Protein kinase-like (PK-like) 5 61 IPR011009 -
Seca3g00819 96 Gene3D Transferase(Phosphotransferase) domain 1 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00819 Seca-Chr3 13615700 13615990 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00819 1 54 Receptor kinase-like Gene Family AT2G23770 46.296 7.09e-12 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca3g00819 PK_Tyr_Ser-Thr 2.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00819 - - gmx:100806221 95.9005