Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00818 ATGGCTCCGGAGTATGTGGAAGAAGGGATAGTCACTTCCAAAATGGATGTCTATGCCTTTGGAGTGGTGCTGCTGGAATTGATCACAGGTAAAGATTTTATCATTGTGCAAGATGGAAGAGAAGTGATGCTTTCAGCCGTCATGGTGAGTCTAATTGATGAAGATGATGCAGAAGAGAGATTCAGTTTGTTCATGGATCCTCGCCTTAGTGGAAATGGTGGAAAAGTATTTGCTCTTGAGCTAGTTAGACTAAGTCTAGCATGCTTGATAGAAGAACCTGCAAAGAGACCAAACATGGCAGAGGTAGTCTCTAGCTTATTAAAAATGTATTCATGGACAGAAGAATATTATGTATGGCAGTACACCCATGGAGAAGTGAATTGA 384 0.4115 MAPEYVEEGIVTSKMDVYAFGVVLLELITGKDFIIVQDGREVMLSAVMVSLIDEDDAEERFSLFMDPRLSGNGGKVFALELVRLSLACLIEEPAKRPNMAEVVSSLLKMYSWTEEYYVWQYTHGEVN. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00818 127 ProSiteProfiles Protein kinase domain profile. 1 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00818 127 Gene3D Transferase(Phosphotransferase) domain 1 1 121 - -
Seca3g00818 127 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 114 - -
Seca3g00818 127 Pfam Protein tyrosine and serine/threonine kinase 1 106 IPR001245 GO:0004672|GO:0006468
Seca3g00818 127 SUPERFAMILY Protein kinase-like (PK-like) 1 120 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00818 Seca-Chr3 13615203 13615586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00818 1 111 Receptor kinase-like Gene Family AT2G33580 32.759 2.46e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca3g00818 PK_Tyr_Ser-Thr 3.6e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00818 - - aip:107606423 161.77