Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00817 ATGGATCATAATGTGCTAATCCTCATTCTTCTCACACAAAGCTTTCTTCTATGTTCAAATGCCACGGCACAGCAAAATTACTCTGGAAATTCAATACTAACCTGCAAGAATAACGACACAATAGGTCCTTCTCCAGCTTTCCTTTACACCTGCAACGGCCTCAACAAATCCTGTTTGGCCTTTCTCATCTTCAAATCCCAACCTCCTTACACCACCACCATCACAATCTCCAACCTCACATCATCAAACCCAGAAGAACTTACGAGAATCAACAACGCCACTATGCTCACAGTGTTCCCTTCTGGCAAAGAGGTAATTGTCCCCGTGAACTGTTCCTGTCTAATTAGTGATTACTACTACCAAGCTGAAAGCAAATATGTATTGCCCCCAAAACCAACATACTTCACAGTAGCAAATAACACGTATCAGGGGCTTACTACATGTGATTCTCTAATTCGTGCCAATCCGTATGGGGTGCTTGATTTGTTACCTGGCATGGAATTGCACGTGCCACTTAGATGTGCTTGTCCAACCAAGAATCAAATTACCATGAATAGCACTAAGTATTTATTGACTTACCCTGTGAATTGGGGTGATAATATTACTAATATTGCCAAAAGATTCAATGTTACTGCAGCAAGTCTAGTTGATGCCAATGGTTTTTCCTCTCAAAATCAAATTCTTTATCCATTCACAACTGTTCTGATTCCGTTAACAAGTGAACCTAAGAGCTCAATAACCATTATTCATAAGGATCAACCAGCCCCTTCACCTCCTATTGTTTCTATCAATAGGAGTAATAATAAGACAAAGAGAAAACTCCTAGTCTCTTTAGCCACCACAGGGAGCTTCATTCTCGTTTTCTGTGTCGTTTTATCTGCTGTGTTTCTCTTCAGAAAGAGAAGAGCAAGGTTCTTTAAAAGAGGTACAAAAGGTAAAACAGTACCAGTGTCTTCAGAAGATATCCGTGAGGAGATAGCATGTATTGAGCATCTCTCTAAAGTGTACAGATTAAAGGAAATAGAGGATGCTACTGAGAACTTCAGCTTAAAGAATAGGATTAAAGGATCTGTTTATCGTGGCGTGTTCGGTTATGACAAAGACATCTTAGCTATCAAGAAAATGAATGCAGATGCGTCCAAGGAAGTGAATTTGCTGGGAAGAATCAATCATTTCAACCTCATAAAGCTGAAAGGTTATTGTAAAAACGATGGCTTATTCTGTCTTGTTTTTGAATACATGGCAAATGGTTCTTTAAGAGAATGGCTTGGTAAAAGTGGGTCCACAGGGCACAATAGTTGGGCAAAGAGGATCCAGATTGCTCTGGATATTGCCAATGGACTTGAGTATCTTCACAGCTTCACAGAGCCTTGCTATGTGCACAAGGGTATTAGCACAGATAACATTCTATTAAACAGTGATCTAAGGGCCAAGATAGCAAATTTTACTCTTGCTGAAGAGTCAAAGAGTGAAGTAACCACAGGTTCTCCTTCTTCCACATTAAATATTGTGGGAACTAGAGGTTATATGGCTCCTGAGTATGTTGAAGCAGGGATAGTCACTTCTAAAATGGATGTCTATGCCTTTGGAGTGGTGCTGCTGGAATTGATAACAGGTAAAGATTCTATTATTGTGCAAGATGGAAGAGAAGTGATGCTTTCAGCAGTCATGGTGAGTCTAATTGATGAAGATGATGCAGAAGAGAGACTCAGTTTGCTCATTGATCCTCGCCTGAGTGGAAATAGTGGGAAAGTATTTTCTCTTCAGCTAGTTAGACTAAGTCTAGCATGCTTGATGGAAGAACCTGCAAGAAGACCAAATATGGCAGAGGTAGTCTCTAGCTTATTAAAAATATATTCAGAAATGAACAGAAGAATATCACCCAGTATGTATAGCAGTAGTACACCCCTGGAGAGGTGA 1920 0.3995 MDHNVLILILLTQSFLLCSNATAQQNYSGNSILTCKNNDTIGPSPAFLYTCNGLNKSCLAFLIFKSQPPYTTTITISNLTSSNPEELTRINNATMLTVFPSGKEVIVPVNCSCLISDYYYQAESKYVLPPKPTYFTVANNTYQGLTTCDSLIRANPYGVLDLLPGMELHVPLRCACPTKNQITMNSTKYLLTYPVNWGDNITNIAKRFNVTAASLVDANGFSSQNQILYPFTTVLIPLTSEPKSSITIIHKDQPAPSPPIVSINRSNNKTKRKLLVSLATTGSFILVFCVVLSAVFLFRKRRARFFKRGTKGKTVPVSSEDIREEIACIEHLSKVYRLKEIEDATENFSLKNRIKGSVYRGVFGYDKDILAIKKMNADASKEVNLLGRINHFNLIKLKGYCKNDGLFCLVFEYMANGSLREWLGKSGSTGHNSWAKRIQIALDIANGLEYLHSFTEPCYVHKGISTDNILLNSDLRAKIANFTLAEESKSEVTTGSPSSTLNIVGTRGYMAPEYVEAGIVTSKMDVYAFGVVLLELITGKDSIIVQDGREVMLSAVMVSLIDEDDAEERLSLLIDPRLSGNSGKVFSLQLVRLSLACLMEEPARRPNMAEVVSSLLKIYSEMNRRISPSMYSSSTPLER. 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00817 639 SUPERFAMILY Protein kinase-like (PK-like) 331 615 IPR011009 -
Seca3g00817 639 Gene3D Phosphorylase Kinase; domain 1 319 413 - -
Seca3g00817 639 FunFam PTI1-like tyrosine-protein kinase 3 414 627 - -
Seca3g00817 639 Gene3D LysM domain 177 247 IPR036779 -
Seca3g00817 639 Pfam Protein tyrosine and serine/threonine kinase 376 615 IPR001245 GO:0004672|GO:0006468
Seca3g00817 639 CDD LysM 192 236 IPR018392 -
Seca3g00817 639 Gene3D Transferase(Phosphotransferase) domain 1 414 633 - -
Seca3g00817 639 Pfam LysM domain 195 237 IPR018392 -
Seca3g00817 639 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 623 - -
Seca3g00817 639 ProSiteProfiles LysM domain profile. 191 236 IPR018392 -
Seca3g00817 639 SUPERFAMILY LysM domain 191 237 IPR036779 -
Seca3g00817 639 ProSiteProfiles Protein kinase domain profile. 300 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00817 639 SMART LysM_2 192 237 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00817 Seca-Chr3 13598067 13599986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00817 4 618 Receptor kinase-like Gene Family AT2G23770 38.315 5.47e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca3g00817 PK_Tyr_Ser-Thr 1.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00817 - - gmx:100806221 825.854