Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00811 ATGATCACAAAACACCCACTTCTAATCCTTTTACTTTTACCTCTATCAATCTTCTTCTTCTTCCCTATAATCAAAGCCCAAGTCAATTACCGCGAGTGTCACCAAACATGCGGCGATTCATCCAAACCCTTCCCTTATCCCTTCGGTTTCTCCTCCGGCTGCGAAATCCGCCTCAATTGCACCCCTAACGGCGGCGTCTTCATCGGCGAATTCCCAGTCCAATCGGTCAACGCAGACCGCATAATCGTCAACATCGAAGCCCAATGCAATCGTCCATTCGATAGCTTCCACCAACTCTTCAGCCACAAATACGCTCCTACTTCAGGAAACGTTATCCTCTTACAGAACTGCACTCAAACGCTTTTGCCCTGTTCTATACCAGAGACTCTGTTGCAATCTCACTTCGAATCTGAGCGTTGCAGCAGTAGCAGTAGAAACGGAAATTTGAGTTGCTATTTCGAGAACAGCACGACGGGTTTCGTGAATGATCGAGAATTGGACCGAATTGGATGCAATTACTTTATGTCTTCGATATCATCGGATAATTTGAGTAACACTTCCGGTGCGGCGGTTTCGTTGGAGGTAGCTACAATTGAGCTTGGATGGTGGCTTCACGGAGATCAATGTCAGTGTTCTGATCATGCTAATTGTACTCACCTTGAGGCACCGCATGATAGAAAGCCTGGCTTTCGGTGTCGCTGCAATGAAGGGTTCGTCGGCGATGGGTTTTTGGCCGGAAATGGTTGCCGACACACAGCTGCATCAACATGCAACCCAGCAAAATACATGTCCGGGCGATGTGGAGGATCAGCAAGATTTATTGTCTTAATTGGAGGATTTGTTTTTGGTGTTTCACTGATGGTTACTCTTGGTTCAATGTGCTGTTTCTTTCGCCGTCGCTCCAAATTAAGAATCACAAAGAGCACAAAAAGGCGCTTTACCGAAGCCACTGGCAATTATAGTGTTCCTATGTATCCCTACAAAGACATTGAGAGAGCCACAAATAGCTTCTCAGAGAAACAGAGACTCGGAACTGGTGCATATGGGACAGTTTATGCTGGAAAACTTTTCAATGATGAATGGGTTGCTATCAAAAGGATAAAACACAGAGACACTGAGAGTATTGAGCAAGTCATGAATGAGATCAAGCTCATTTCCACAGTGAGCCACACCAATTTAGTGCGCTTGTTGGGTTGTTCCATTGAATATGGAGAACAAATCCTTGTGTATGAGTTCATGCCTAATGGAACACTGAGTCAGCATTTACAAAGAGAGAGAGGGAATGGACTTCCATGGTGTGTTAGGCTCACAATTGCCACTGAAACAGCACAAGCCATAGCACATCTTCATTCAGCCATTAATCCCCCCATTTACCACAGAGATATCAAGTCAAGTAACATACTTTTGGACTACAATTTTGGATCCAAAGTTGCAGACTTTGGGCTTTCTAGGCTTGGGATGACTGAAATATCCCACATTTCAACTGCCCCACAAGGAACCCCTGGCTATGTTGATCCACAGTACCATCAAGATTTCCACCTTTCTGATAAAAGTGATGTGTATAGCTTTGGTGTTGTGCTTGTTGAGATCATAACAGGACTGAAAGTTGTGGACTTTTCTCGTCCTCCAAATGAAGTAAATCTTGCTTCTCTTGCTGCAGATAGGATTGGGAAAGGGCTTTTGGATGAGATTATAGACCCATTCCTTGAGCCTGAAATAACCAATGATGCTTGGACCCTTTCCTCTATACACAAGGTGGCTGAGCTGGCATTCAGATGCCTTGCATTTCACAGGGACATGAGGCCTTCCATGACAGAAGTAGCAGCTGAGCTGGAACAGCTAAGGTTGAGTAAGTGGACAACTTTTGAAGAAAACCATTGTACAGCTTCAACGGAATTGTCTTCTTGCTCTTCCTCATCTAGTGAAAGTGAGAAACCACTAAGCAGTAGCATCACAGTGAAGAAGGTTGGGCCAAAGGGAAAAGCCCATCTAAAGCTGCAGACTGGGCCTGTTACTTTAAAGTCAATGGAAAGGCTCAATAGTAACTCACCGGTTTCGGTCCAAGACCCAGACCTGTGGTTTAGTGAACAGAGCTCTCCTTCAAGTAGTTTTCCTAGTAAGTCATTTGATTGA 2133 0.4468 MITKHPLLILLLLPLSIFFFFPIIKAQVNYRECHQTCGDSSKPFPYPFGFSSGCEIRLNCTPNGGVFIGEFPVQSVNADRIIVNIEAQCNRPFDSFHQLFSHKYAPTSGNVILLQNCTQTLLPCSIPETLLQSHFESERCSSSSRNGNLSCYFENSTTGFVNDRELDRIGCNYFMSSISSDNLSNTSGAAVSLEVATIELGWWLHGDQCQCSDHANCTHLEAPHDRKPGFRCRCNEGFVGDGFLAGNGCRHTAASTCNPAKYMSGRCGGSARFIVLIGGFVFGVSLMVTLGSMCCFFRRRSKLRITKSTKRRFTEATGNYSVPMYPYKDIERATNSFSEKQRLGTGAYGTVYAGKLFNDEWVAIKRIKHRDTESIEQVMNEIKLISTVSHTNLVRLLGCSIEYGEQILVYEFMPNGTLSQHLQRERGNGLPWCVRLTIATETAQAIAHLHSAINPPIYHRDIKSSNILLDYNFGSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIITGLKVVDFSRPPNEVNLASLAADRIGKGLLDEIIDPFLEPEITNDAWTLSSIHKVAELAFRCLAFHRDMRPSMTEVAAELEQLRLSKWTTFEENHCTASTELSSCSSSSSESEKPLSSSITVKKVGPKGKAHLKLQTGPVTLKSMERLNSNSPVSVQDPDLWFSEQSSPSSSFPSKSFD. 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00811 710 FunFam Wall-associated receptor kinase-like 14 304 412 - -
Seca3g00811 710 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Seca3g00811 710 SMART serkin_6 337 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00811 710 MobiDBLite consensus disorder prediction 673 710 - -
Seca3g00811 710 SUPERFAMILY Protein kinase-like (PK-like) 314 612 IPR011009 -
Seca3g00811 710 Gene3D Phosphorylase Kinase; domain 1 298 412 - -
Seca3g00811 710 FunFam Wall-associated receptor kinase-like 14 isoform A 209 244 - -
Seca3g00811 710 MobiDBLite consensus disorder prediction 632 710 - -
Seca3g00811 710 FunFam Wall-associated receptor kinase-like 20 413 624 - -
Seca3g00811 710 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 649 IPR044652 GO:0004672
Seca3g00811 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Seca3g00811 710 Gene3D Laminin 208 244 - -
Seca3g00811 710 Pfam Protein kinase domain 337 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00811 710 ProSiteProfiles Protein kinase domain profile. 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00811 710 MobiDBLite consensus disorder prediction 632 650 - -
Seca3g00811 710 Gene3D Transferase(Phosphotransferase) domain 1 413 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00811 Seca-Chr3 13472600 13478221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00811 8 703 Receptor kinase-like Gene Family AT2G23450 51.052 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca3g00811 Pkinase 8.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00811 - - gmx:100777480 1074.31