Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00810 ATGAACCCTGAAATTAATCATGAATTATCCTTGAGCTTACCCTCTCATCCAGATGAATCATCACCATATCAGTTTGGAACCAATTCTGCTACACTAATTAATGCAGATAATCACAATAGGGAACTAAGATATGTGGTGGCAGAACATCGTGAGGATACCAACATCACAACAAACACTGGGCGCTTACCGTTCAAGAGAAGTTCTACTAATTCTGGGAGAGAATTCAATATAGGTGAAAGTTCAAACATGGGTTCTCAAATTGAAATAGCCAAACAACACGTTGGTGCCACTTCCCATGATAATGTGATCAACACATCACCATTAAGCATTGGTCCTACATCTGCAAATAGTCAACCGAGACGCTTTAGAGGTGCAACATCTGTTTCTGAGATGCAAGATGGACAAAGTGAAAGCAATACTAATCTGCAGATCATACCTGCTGCTAATATTGAACAAGATTTTGTACGTCCCAATCCCAACAGATTTTCAAGCAGCTACACAAGAGGTCTACAAGTTCATTTACTTGGCCATGCACCTTTGGTTTCACAGCTTGAACATCCTTCTTTTTTTAACCCCTTAGAAAATTCAAATGGAGCAAGTTCCTCAAGACAATCAACCGAGATTAATGCTCCTACTTTTCTTCGTGATCTAAGTGGTTCCCCTTCGATTACCAATATGAATATAAGGAATCCTATTGCGATATCTATCACCGACACTTCTCAAATTGGAAGAAATGAAGATAGGGAATCATTTCATACAAGGCTTGGAGAGATTAGGCAAAGAACAATGCAAATATCTGAGATTCATGATGGTGAAAATGATGAACAACCACCACCTCGAGTTCCTAGTATTGCTGAAATGAGAAACGATATAGAGGCTCGGGCTCAAGCTGCTTTGGAACGTTTACACTCTGGTCAAGTTCTACGAGTTCAGGCTCAAGCTGCTTTGGAACGTTTACAATCTGGTCAAGTTCTACGAGTTCAGGATATGATTGCCATCAACCGTTCACTTGCAATACATATGATTGAGGCCCAAGTTGTTGATGTAGTTGGGGATTTTGAGGACATGGAAGCGAGTTTGATTCTTGGACTACCAGAGGAGTTAATTATGAAGTACATTAAGATTGAAAAGTTTGTGCTGGGAGATAAGGAGACTCAAGAAGCGTGTTGCATTTGTCAGGAAGAATATGCCAACGGAGTAGAAGTCGGGAAGTTGGATTGTGAGCACATATTTCATATTGAATGCATAAAGCAATGGCTCAACCAGAAGAATGAATGTCCCATTTGCAGGAAAAAGGCATTAGCGACTTTCGAGTGA 1317 0.4024 MNPEINHELSLSLPSHPDESSPYQFGTNSATLINADNHNRELRYVVAEHREDTNITTNTGRLPFKRSSTNSGREFNIGESSNMGSQIEIAKQHVGATSHDNVINTSPLSIGPTSANSQPRRFRGATSVSEMQDGQSESNTNLQIIPAANIEQDFVRPNPNRFSSSYTRGLQVHLLGHAPLVSQLEHPSFFNPLENSNGASSSRQSTEINAPTFLRDLSGSPSITNMNIRNPIAISITDTSQIGRNEDRESFHTRLGEIRQRTMQISEIHDGENDEQPPPRVPSIAEMRNDIEARAQAALERLHSGQVLRVQAQAALERLQSGQVLRVQDMIAINRSLAIHMIEAQVVDVVGDFEDMEASLILGLPEELIMKYIKIEKFVLGDKETQEACCICQEEYANGVEVGKLDCEHIFHIECIKQWLNQKNECPICRKKALATFE. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00810 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 435 IPR013083 -
Seca3g00810 438 MobiDBLite consensus disorder prediction 56 79 - -
Seca3g00810 438 ProSiteProfiles Zinc finger RING-type profile. 389 430 IPR001841 -
Seca3g00810 438 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g00810 438 SUPERFAMILY RING/U-box 388 433 - -
Seca3g00810 438 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 100 434 IPR045191 GO:0061630
Seca3g00810 438 SMART ring_2 389 429 IPR001841 -
Seca3g00810 438 Pfam Ring finger domain 388 430 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00810 Seca-Chr3 13411006 13416334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00810 288 436 C3H Transcription Factor Family AT2G15530 32.903 9.42e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00810 - - lang:109350901 122.094