Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00806 ATGCATTTCTTTAAAAAGAAAAGCAAGGATTCACCCATGTCATCCGCCCCAGGGGTACAGTTGCACATCCAACAACACCATGTGGTGATGGATAATGGCATAGTCCAAGTCACGTTATCAAATCCAGATGGAATTGTCACTGGAATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAATAAGGAGACCAATAGAGGGTACTGGGATCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATGTTTGACGTTTTTATTGTTGCTCTGAGGATAGTCTTTTTAAGCAAATGTGAACTCAAGGTGTTATGGTCCAGGATTAAAGGAACGTGTTTTAGCGTTATAGTTCAAAATGAGGAACAAGTGGAGCTTTCATTCACAAGAATGTGGGATCCTTCTCTTGAGGGAAAGTTCGTCCCCTTAAATATTGACAAAAGATTCATATTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATCTTAGTGAAACGAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAGTACATGGCTATGGCAGACAATAGGCGAAGGATTCTGCCTTTTCCGGAGGATCGGTTACCAGGAAGATGCCAAACCTTGGCCTACCCAGAAGCTGTCATACTAACCAATCCCAAAGATCCACGACTGCAAGGAGAGGTACTTGTTGCGAATATTTCCTTTGGCACAGCTTTCATCTTGCCAAAGCTTCTAATTGTGGACGACAAATATCAGTATTCATGTGAAAACATAGACAATCGAGTCCATGGGTGGATATCTTTCAGTCCACCTGTAGGATTTTGGCAGATAACACCTAGTGATGAGTTCCGTTCTGGTGGACCCCACAAACAGAATTTGACCTCACATGTCGGCCCCACCACACTTGCAATGTTTCTCAGTGGTCACTATGCGGGACAAGACCTGGTGCCCAAATTTAGAGGCGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTGTATATTTATCTTAATTCTGGATCAGTTGGTGACGACCCACTTTGGCTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATTCTTTTCCCGCTTCAGAGGATTTTCTAAAATCAGATCAACGGGGCAATGTCAGTGGCAGATTACTCGTCTTAGACAGGTACGTCAGCACAGACTTAATATCAGCATATGGTGCTTATGTTGGTCTGGCCCCACCTGGAGGTGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAACGGATTTTTTACTATTAGAAATATACGAGCGGGTGATTATAACCTTTTTGCTTGGGTGCCTGGTTTTGTTGGGGACTACAGACTTGATGATTTTATGAAGATAACTTCAGGTTCCAATATTGAATTGGGCGAACTTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTTTTCCTGATAGATCCGCTGCAGAATTTTATGTTCCTGATCCCAATCCACAACATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTATACAGAATTGTATCCTGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACTTTACAAAGGATTGGTTTTTTGCACATATTCCCAGAAAAAAAGAGGATAACACTCATCAAGGAACAACTTGGCAAATCAAGTTCCAAGTCGGTAGTGTTATTCAGGGAAGTACATATAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAATAAATGATCCCAATGCAAGGCGTCCACTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCATGGACTCTATTGGCTGTACAATGTGGATGTACCAAGTTCTCATCTTATTAATGGAACGAATACTATATATTTTACCCAACCAAGATGCACCAATCTTTTCCAGGGTATCATGTTCATATTTATGCTTGTTGTTTATGATAGACGAGTGCATCCACCACCATTCATGAAACAGGTGGTGATGGACAATGGCATACTAAAAGTCACCTTATCAAATCCTGAGGGAATTGTGACTGGAATACAGTATAATGACATTGACAACTTGCTTGAAGTTTTGAATGAAGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACCACTGGTAGATTTGATGTGATAAAGGGAAGCAGTTTCAACGTTGTAGTGGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGACGTGGGATGCCTCCCTAGATGGCAAGTTGGTTCCTTTGAATATTGATAAAAGGTTCATAATGCTTCGTGGCTCATCTGGCTTCTACTCATATGCAATTTATGAGCACTTGGAGGACTGGCCTGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGACCGATTACCACCAAGAGGCCAACCCCTTGCCTATCCAGAGGCAGTTCTGCTTCTCAATCCTATTGAACCAGAGTTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATTTGCATGGATCCTGCTGTGGGATTCTGGCTAATTACGCCTACCAATGAGTTTCGATCTGGTGGACCCCTCAAACAGAACTTAACTTCCCACGTTGGACCTACCACGCTTGCTGTGTTTCTGAGTGCTCATTATAGTGGAGAGGATTTGGTGCCTAAGTTCAAAGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAATTTTCATCTATTTAAATTCTCCTAATGATGGAGGTGACCCCCTTACACTATGGGATGATGCTAAACTACAGATGTTAGTGGAAGTTCAAAGCTGGCCTTACAGTTTCCCTGAATCAGAGGATTACCCAAAGTGGGACGAACGTGGTAACGTTAGTGGCAGGCTATTGATTAGAGAAAGGTATATAGATGATGATGACTATATATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCAGGGGATGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTCAAGCAGATGATGATGGCTATTTCTCCATCAGCAATATTCGTGCTGGAGACTATAATGTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAATTATGAACATAACAGAAGGTTGTGACATAGACATTGGTGATCTTGTATATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATAGGAATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAACTATACCCTGACAAAGACTTGATTTATACTGTTGGTGTTAGTGACTACACTAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAGGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTCCAGCTTGATAGTGTAAACAAAAGTAGGAGCTATAAACTACGAGTGGCTGTAGCATCAGCAACATTCTCTGAACTTCAGGTTCGAGTTAATGATCCAAAGGCAAATCGACCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATCGCTAGGCATGGAATTCATGGGCTTTATTGGCTTTTTAATGTGGACATACCAGGTACTAAACTTGTTGAAGGAGAGAATACCATCTTTTTGACACAAGCAAGAGGAAATAGCCCATTTCAGGCCATTATGTATGACTATATTCGTTTGGAAAGTCCAGCAGTAGTTTAG 3960 0.4141 MHFFKKKSKDSPMSSAPGVQLHIQQHHVVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGMFDVFIVALRIVFLSKCELKVLWSRIKGTCFSVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLNGWPDFDLSETRITFKLRKDKFQYMAMADNRRRILPFPEDRLPGRCQTLAYPEAVILTNPKDPRLQGEVLVANISFGTAFILPKLLIVDDKYQYSCENIDNRVHGWISFSPPVGFWQITPSDEFRSGGPHKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGEPWKKVFGPVYIYLNSGSVGDDPLWLWEDAKIQMMNEVQSWPYSFPASEDFLKSDQRGNVSGRLLVLDRYVSTDLISAYGAYVGLAPPGGAGSWQRECKDYQFWTRADENGFFTIRNIRAGDYNLFAWVPGFVGDYRLDDFMKITSGSNIELGELVYEPPRDGPTLWEIGFPDRSAAEFYVPDPNPQHINKLFINHPDRFRQYGLWDRYTELYPDADLVYTIGVSDFTKDWFFAHIPRKKEDNTHQGTTWQIKFQVGSVIQGSTYKLRVAIASATLAELQIRINDPNARRPLFTSGLIGRDNSIARHGIHGLYWLYNVDVPSSHLINGTNTIYFTQPRCTNLFQGIMFIFMLVVYDRRVHPPPFMKQVVMDNGILKVTLSNPEGIVTGIQYNDIDNLLEVLNEESNRGYWDLVWSSPTSTGTTGRFDVIKGSSFNVVVENEDQVELSFTRTWDASLDGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPRGQPLAYPEAVLLLNPIEPEFKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPTNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPIFIYLNSPNDGGDPLTLWDDAKLQMLVEVQSWPYSFPESEDYPKWDERGNVSGRLLIRERYIDDDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWAQADDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVIMNITEGCDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLDSVNKSRSYKLRVAVASATFSELQVRVNDPKANRPLFSSGLIGRDNSIARHGIHGLYWLFNVDIPGTKLVEGENTIFLTQARGNSPFQAIMYDYIRLESPAVV. 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00806 1319 SUPERFAMILY Starch-binding domain-like 1059 1104 IPR013784 GO:0030246
Seca3g00806 1319 Pfam Polysaccharide lyase family 4, domain III 493 676 IPR029411 -
Seca3g00806 1319 Pfam Polysaccharide lyase family 4, domain III 1125 1313 IPR029411 -
Seca3g00806 1319 Pfam Polysaccharide lyase family 4, domain II 1039 1111 IPR029413 -
Seca3g00806 1319 Pfam Polysaccharide lyase family 4, domain II 408 479 IPR029413 -
Seca3g00806 1319 FunFam Rhamnogalacturonate lyase B 1012 1112 - -
Seca3g00806 1319 SUPERFAMILY Galactose-binding domain-like 490 676 IPR008979 -
Seca3g00806 1319 SUPERFAMILY Galactose mutarotase-like 699 977 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca3g00806 1319 CDD RGL4_N 27 346 - -
Seca3g00806 1319 SUPERFAMILY Galactose-binding domain-like 1122 1314 IPR008979 -
Seca3g00806 1319 CDD RGL4_C 495 676 - -
Seca3g00806 1319 Pfam Rhamnogalacturonate lyase family 694 884 IPR010325 -
Seca3g00806 1319 Pfam Rhamnogalacturonate lyase family 14 234 IPR010325 -
Seca3g00806 1319 CDD RGL4_M 384 483 IPR029413 -
Seca3g00806 1319 CDD RGL4_N 695 985 - -
Seca3g00806 1319 Gene3D - 252 359 IPR014718 GO:0030246
Seca3g00806 1319 Gene3D - 693 987 IPR014718 GO:0030246
Seca3g00806 1319 Gene3D - 1014 1107 - -
Seca3g00806 1319 Gene3D - 381 478 - -
Seca3g00806 1319 Gene3D - 1123 1314 - -
Seca3g00806 1319 Gene3D - 491 684 - -
Seca3g00806 1319 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 693 1317 - -
Seca3g00806 1319 CDD RGL4_M 1015 1115 IPR029413 -
Seca3g00806 1319 CDD RGL4_C 1127 1314 - -
Seca3g00806 1319 SUPERFAMILY Starch-binding domain-like 427 476 IPR013784 GO:0030246
Seca3g00806 1319 FunFam Rhamnogalacturonate lyase B 381 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00806 Seca-Chr3 13333056 13346242 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00806 19 679 Polysaccharide Lyase AT1G09890 64.555 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00806 K18195 - gmx:100814721 1202.19