Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00804 ATGCTGCAATTCATGGTCCTTCTGGGTTGTGCTACTAATCCAGGGGTGCGTTTGGATATTCAAGAAAAACATGTGGTAATGGATAATGGCATAGTCCAGGTTACCCTATCAAATCCTGAAGGAATTGTCACAGGAATTCAATATAATGGGGTTGACAATTTGCTGGAAGTTCTTAACCAGGAATCTAACAGAGGGTACTGGGATATTGTATGGGACCAGGGTGGGAAAAATAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGGATGGAAGCAACAAATTTGACTGTGATAGTGGAAAATGAAGAACAGGTAGAGCTATCTTTCACCAGAAAGTGGAATCTCTCTCTTGAGGGAAAGCTTGCACCACTCAATATTGATAAAAGGTTTATAATGCTTAGGGGTTCATGTGGGTTTTACACATATGCCATTTATGAGCATTTGAAGGAATGGCCTGCCTTTGATCTTGACAATACTAGGATTGCATTCAAGCTTAGGAAAGACAAGTTCCATTACATGGTTGTAGCAGATGAGAGGCAAAGATTTATGCCGCTACCTGATGATCGATCACAAGAAAGAGGTGAAGTTTTGGCCTATCCAGAGGCTGTTCGTCTTGTCAATCCTGTGGAACCAGAGTTCAAAGGAGAGGTGGATGACAAATATCAATACTCATGTGAGAGTCGACAGAACCGTGTTCATGGCTGGATATGCATCGATCCATCGGAATCCATTGGATTCTGGCTAATTACACCCAGCTTTGAGTTCCGATCTGCTGGGCCCCTCAAGCAATACCTAACTTCCCATGTGGGCCCCACTACCCTCTCTGTATTTCATAGTACACATTATTCGGGGACAGATCTGATAATGAAATTTGGACCCAATGAGGCGTGGAAGAAAGTCTTTGGGCCCGTTTTCATATACCTTAATTCCCTCTCTAATGGGTTTAGCCCCATCTTGCTCTGGGAGGATGCCAAACAACAGATGGTCAATGAAATTGAAAGCTGGCCTTATACATTTCCAGCTTCAGAGGATTTCCTCTCATCTAACCAACGTGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACATCAGTGATGCATTCATCCCAGTAAGCGGTGGTTATGTGGGATTAGCATCCCCAGGAGATGTTGGATCTTGGCAAAGAGAATCCAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTGACATTCTTCCTGGGGACTATAATCTGTATTCCTGGGTCAATGGATTTATTGGTGATTATCAATATGATAGCGTCATTAACGTAACCTCAGGTTGTGAAATTAATGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACATTATGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGAACCAAATCCCATGTACATAAACAGACTTTATGTCAACCATTCAGACAGGTATAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTATCCAAATGAAGACCTAGTTTACACAGTTGGCATTAGTGACTACAGAAAAGATTGGTTTTTTGCTCAGGTTAACAGGAAGATAGACAATAACACTTACCAAGGAACCACATGGCAAATTAATTTCAATCTTGATTATGTGAATACCAATGGAACCTACAAATTGAGACTGGCTCTGGCATCTGTACATGATGCTAACCTACAGATTTGGATAAACAATTCAGAAGCAAATCCACCTTTATTTTCAAGTGGAATAATTGGAAAGGAGAATACAATAGCCAGACATGGAATTCACGGGCTCTACTGGCTATACAGCATTGATGTACAAGGCACTCTTCTTGTGCAGGGGAACAATACCATCTTTCTAACTCAAGCAAGGAACACAAGTCCTTTTCAAGGAATTTTGTATGATTACATACGTTTAGAAGGACCCCCTTTTATAAATCATAAAGATCAAAACTAG 1986 0.4129 MLQFMVLLGCATNPGVRLDIQEKHVVMDNGIVQVTLSNPEGIVTGIQYNGVDNLLEVLNQESNRGYWDIVWDQGGKNRTKKGAKGKGRFDRMEATNLTVIVENEEQVELSFTRKWNLSLEGKLAPLNIDKRFIMLRGSCGFYTYAIYEHLKEWPAFDLDNTRIAFKLRKDKFHYMVVADERQRFMPLPDDRSQERGEVLAYPEAVRLVNPVEPEFKGEVDDKYQYSCESRQNRVHGWICIDPSESIGFWLITPSFEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGTDLIMKFGPNEAWKKVFGPVFIYLNSLSNGFSPILLWEDAKQQMVNEIESWPYTFPASEDFLSSNQRGKVEGRLLVRDRYISDAFIPVSGGYVGLASPGDVGSWQRESKGYQFWTITDDKGYFSIIDILPGDYNLYSWVNGFIGDYQYDSVINVTSGCEINVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPEPNPMYINRLYVNHSDRYRQYGLWERYADLYPNEDLVYTVGISDYRKDWFFAQVNRKIDNNTYQGTTWQINFNLDYVNTNGTYKLRLALASVHDANLQIWINNSEANPPLFSSGIIGKENTIARHGIHGLYWLYSIDVQGTLLVQGNNTIFLTQARNTSPFQGILYDYIRLEGPPFINHKDQN. 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00804 661 Pfam Rhamnogalacturonate lyase family 15 219 IPR010325 -
Seca3g00804 661 FunFam Rhamnogalacturonate lyase B 349 448 - -
Seca3g00804 661 Gene3D - 18 294 IPR014718 GO:0030246
Seca3g00804 661 Gene3D - 459 650 - -
Seca3g00804 661 CDD RGL4_M 352 451 IPR029413 -
Seca3g00804 661 Pfam Polysaccharide lyase family 4, domain II 375 447 IPR029413 -
Seca3g00804 661 Gene3D - 349 448 - -
Seca3g00804 661 CDD RGL4_N 24 312 - -
Seca3g00804 661 SUPERFAMILY Galactose-binding domain-like 458 650 IPR008979 -
Seca3g00804 661 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 21 653 - -
Seca3g00804 661 Pfam Polysaccharide lyase family 4, domain III 461 649 IPR029411 -
Seca3g00804 661 CDD RGL4_C 463 650 - -
Seca3g00804 661 SUPERFAMILY Starch-binding domain-like 395 448 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00804 Seca-Chr3 13319829 13327269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00804 16 652 Polysaccharide Lyase AT1G09890 65.938 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00804 K18195 - gmx:100786488 1204.5