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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Seca3g00804
ATGCTGCAATTCATGGTCCTTCTGGGTTGTGCTACTAATCCAGGGGTGCGTTTGGATATTCAAGAAAAACATGTGGTAATGGATAATGGCATAGTCCAGGTTACCCTATCAAATCCTGAAGGAATTGTCACAGGAATTCAATATAATGGGGTTGACAATTTGCTGGAAGTTCTTAACCAGGAATCTAACAGAGGGTACTGGGATATTGTATGGGACCAGGGTGGGAAAAATAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGGATGGAAGCAACAAATTTGACTGTGATAGTGGAAAATGAAGAACAGGTAGAGCTATCTTTCACCAGAAAGTGGAATCTCTCTCTTGAGGGAAAGCTTGCACCACTCAATATTGATAAAAGGTTTATAATGCTTAGGGGTTCATGTGGGTTTTACACATATGCCATTTATGAGCATTTGAAGGAATGGCCTGCCTTTGATCTTGACAATACTAGGATTGCATTCAAGCTTAGGAAAGACAAGTTCCATTACATGGTTGTAGCAGATGAGAGGCAAAGATTTATGCCGCTACCTGATGATCGATCACAAGAAAGAGGTGAAGTTTTGGCCTATCCAGAGGCTGTTCGTCTTGTCAATCCTGTGGAACCAGAGTTCAAAGGAGAGGTGGATGACAAATATCAATACTCATGTGAGAGTCGACAGAACCGTGTTCATGGCTGGATATGCATCGATCCATCGGAATCCATTGGATTCTGGCTAATTACACCCAGCTTTGAGTTCCGATCTGCTGGGCCCCTCAAGCAATACCTAACTTCCCATGTGGGCCCCACTACCCTCTCTGTATTTCATAGTACACATTATTCGGGGACAGATCTGATAATGAAATTTGGACCCAATGAGGCGTGGAAGAAAGTCTTTGGGCCCGTTTTCATATACCTTAATTCCCTCTCTAATGGGTTTAGCCCCATCTTGCTCTGGGAGGATGCCAAACAACAGATGGTCAATGAAATTGAAAGCTGGCCTTATACATTTCCAGCTTCAGAGGATTTCCTCTCATCTAACCAACGTGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACATCAGTGATGCATTCATCCCAGTAAGCGGTGGTTATGTGGGATTAGCATCCCCAGGAGATGTTGGATCTTGGCAAAGAGAATCCAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTGACATTCTTCCTGGGGACTATAATCTGTATTCCTGGGTCAATGGATTTATTGGTGATTATCAATATGATAGCGTCATTAACGTAACCTCAGGTTGTGAAATTAATGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACATTATGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGAACCAAATCCCATGTACATAAACAGACTTTATGTCAACCATTCAGACAGGTATAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTATCCAAATGAAGACCTAGTTTACACAGTTGGCATTAGTGACTACAGAAAAGATTGGTTTTTTGCTCAGGTTAACAGGAAGATAGACAATAACACTTACCAAGGAACCACATGGCAAATTAATTTCAATCTTGATTATGTGAATACCAATGGAACCTACAAATTGAGACTGGCTCTGGCATCTGTACATGATGCTAACCTACAGATTTGGATAAACAATTCAGAAGCAAATCCACCTTTATTTTCAAGTGGAATAATTGGAAAGGAGAATACAATAGCCAGACATGGAATTCACGGGCTCTACTGGCTATACAGCATTGATGTACAAGGCACTCTTCTTGTGCAGGGGAACAATACCATCTTTCTAACTCAAGCAAGGAACACAAGTCCTTTTCAAGGAATTTTGTATGATTACATACGTTTAGAAGGACCCCCTTTTATAAATCATAAAGATCAAAACTAG
1986
0.4129
MLQFMVLLGCATNPGVRLDIQEKHVVMDNGIVQVTLSNPEGIVTGIQYNGVDNLLEVLNQESNRGYWDIVWDQGGKNRTKKGAKGKGRFDRMEATNLTVIVENEEQVELSFTRKWNLSLEGKLAPLNIDKRFIMLRGSCGFYTYAIYEHLKEWPAFDLDNTRIAFKLRKDKFHYMVVADERQRFMPLPDDRSQERGEVLAYPEAVRLVNPVEPEFKGEVDDKYQYSCESRQNRVHGWICIDPSESIGFWLITPSFEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGTDLIMKFGPNEAWKKVFGPVFIYLNSLSNGFSPILLWEDAKQQMVNEIESWPYTFPASEDFLSSNQRGKVEGRLLVRDRYISDAFIPVSGGYVGLASPGDVGSWQRESKGYQFWTITDDKGYFSIIDILPGDYNLYSWVNGFIGDYQYDSVINVTSGCEINVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPEPNPMYINRLYVNHSDRYRQYGLWERYADLYPNEDLVYTVGISDYRKDWFFAQVNRKIDNNTYQGTTWQINFNLDYVNTNGTYKLRLALASVHDANLQIWINNSEANPPLFSSGIIGKENTIARHGIHGLYWLYSIDVQGTLLVQGNNTIFLTQARNTSPFQGILYDYIRLEGPPFINHKDQN.
662
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Seca3g00804
661
Pfam
Rhamnogalacturonate lyase family
15
219
IPR010325
-
Seca3g00804
661
FunFam
Rhamnogalacturonate lyase B
349
448
-
-
Seca3g00804
661
Gene3D
-
18
294
IPR014718
GO:0030246
Seca3g00804
661
Gene3D
-
459
650
-
-
Seca3g00804
661
CDD
RGL4_M
352
451
IPR029413
-
Seca3g00804
661
Pfam
Polysaccharide lyase family 4, domain II
375
447
IPR029413
-
Seca3g00804
661
Gene3D
-
349
448
-
-
Seca3g00804
661
CDD
RGL4_N
24
312
-
-
Seca3g00804
661
SUPERFAMILY
Galactose-binding domain-like
458
650
IPR008979
-
Seca3g00804
661
PANTHER
RHAMNOGALACTURONATE LYASE FAMILY PROTEIN
21
653
-
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Seca3g00804
Seca-Chr3
13319829
13327269
Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Seca3g00804
16
652
Polysaccharide Lyase
AT1G09890
65.938
0.0
877
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Seca3g00804
K18195
-
gmx:100786488
1204.5
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