Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00796 ATGGAGCTCTATGACCATGATTTCTTGGAGGAATTAATGGCTCTAAGAAGAGAAACATGGGACACCAATCCAATTACAGAAGAAAACCAATTCTTCTCTAATGGTTGGAGTTTTGACTCTTTTGATCAAAACTCTCTAGGCTATATCCCAAACTCTTCTTGTGGTCAACAAGTTCCTCAAAGTTATTACAATGACTACAACAACTTCAATGAAATCTATGGCTCCTTGCTTCTTGATGAATCCTCTGCCTCTGCCTCTGCACCACAGATTATGGATTCATACTATAATAATAGTAACACCCTTGACCTTGATACTCCACTCAATACACCTCCATTTCTTGCTCAAGAAGACTTGCCATTGTCCATGATGGAAGAAGAGGATCCATGTTTGCTTGGGGAAGAGCTTCAGAATTTGGAGCTGCAAACCACTTGCAAAATGGAGCCAATCCAATCCCCTGAAATAATGCCAGTTTTCAACATGGGCACTGGTCTTGAAAGAAAGAATCGATCAAAGAAGCTTCAAGGGCAACCCTCCAAGAATCTAATGGCAGAGAGGAGAAGAAGAAAGAGATTAAATGATCGTCTCTCAATGCTAAGAGCAATTGTCCCTAAGATAAGCAAGATGGACAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAGCTTCTAGAGAAGATTAACAATCTTCAACAAGAAATAAAAGTGGATTCTGATTCAAACATTGCTGGCATTTTCAAAGATGTAAAGCCAAATGAAATCTTAGTGAGAAATTCACCCAAGTTTGAGGTGGAGAGGAATGTGGACACCAGGATTGAAATTTGCTGTGCAGGGAAAGCAGGGTTGTTGGTATCCACAGTAAACACCTTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTAATTAGCTCTTTCAGTGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTGGAGAGAAGGACAATGCTGAGTTCTGAAGATATTAAGCAAGCATTATTTAGAAGTGCAGGGTATGGAGGGAGATGTTTATGA 1038 0.3988 MELYDHDFLEELMALRRETWDTNPITEENQFFSNGWSFDSFDQNSLGYIPNSSCGQQVPQSYYNDYNNFNEIYGSLLLDESSASASAPQIMDSYYNNSNTLDLDTPLNTPPFLAQEDLPLSMMEEEDPCLLGEELQNLELQTTCKMEPIQSPEIMPVFNMGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEIKVDSDSNIAGIFKDVKPNEILVRNSPKFEVERNVDTRIEICCAGKAGLLVSTVNTLEALGLEIQQCVISSFSDFTMQASCSEELERRTMLSSEDIKQALFRSAGYGGRCL. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00796 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Seca3g00796 345 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 71 340 - -
Seca3g00796 345 Gene3D - 165 239 IPR036638 GO:0046983
Seca3g00796 345 Pfam Helix-loop-helix DNA-binding domain 181 224 IPR011598 GO:0046983
Seca3g00796 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 236 IPR036638 GO:0046983
Seca3g00796 345 SMART finulus 181 230 IPR011598 GO:0046983
Seca3g00796 345 Coils Coil 214 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00796 Seca-Chr3 13173388 13175402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00796 166 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.582 5.38e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g00796 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00796 - - gmx:100812578 543.117