Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00794 ATGTTGGTCCCGGATCAACCCACTGGTTTTAAGCGATATGCATGCAGGCTTGAAGCAAGTAAAAGTTTACAGGAGGAACGACCAGGAATCACTACCTCCACCCTTAATGCACTTGTTTCCTTGAAATGGAAGGAATTGAGTGAGGAAGAGAGACAATTGTGGAATGGCAAAGCATCTGAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATATAACAAATGCCTCGCTGCAACTGCGAGCCAGGAGTAG 252 0.4524 MLVPDQPTGFKRYACRLEASKSLQEERPGITTSTLNALVSLKWKELSEEERQLWNGKASEAMDAYKKELEEYNKCLAATASQE. 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00794 83 Pfam HMG (high mobility group) box 19 73 IPR009071 -
Seca3g00794 83 SMART hmgende2 2 74 IPR009071 -
Seca3g00794 83 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 18 82 IPR044601 GO:0003677
Seca3g00794 83 SUPERFAMILY HMG-box 19 74 IPR036910 -
Seca3g00794 83 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 4 73 IPR009071 -
Seca3g00794 83 Gene3D High mobility group box domain 4 83 IPR036910 -
Seca3g00794 83 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00794 Seca-Chr3 13157193 13160121 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca3g00794 HMG_box 2.1e-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00794 K09273 - gmx:100783033 116.701