Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00792 ATGTCACTGCCGGTTCTAGGCATAGGGGAGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGTTTCCTCAACCACCATGGGATTGAAAGAACGCAACTACATTGGAATGGGGGGATTATCTGATTGTTCTTCTGTGGACAGCTCAGTTCCCTCCTTCTCAGATGAGAGTAGAAGTAATTTGAACCTAAAAGCTACAGAACTCAGGCTTGGGCTTCCAGGATCACAGTCTCCTGAAAGAGATTCTGATCTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAACCTCTGTTTCCTTTGTGCCCTTCTGCTGATGATCACCATTCCTCAGCAAAGATTGCTGTTTTGGGCAACAAGAGAGGTTTCTCAGATGCCATGAATGGGATTTCAGAGGGGAAATACCTGGTTAATTCAGACCCCAATCCAATTCTGTCACATAGGCCTCCTAAACCTTGTTCTACGCCTGAGAATGTTGGGGCTCAACAAGCAAAAATGAAAGAAGTAGCAACAACAAAGGCGGGACTCGAGAGGCCTCATGCCGTCAAAGAAACCAGATCAAATCTTGATGGTTCTGCAAATAATAATAGCAGTGCACCAGCCACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTTAGGAAAAATTCATTGGCAACTAATTCAAAGAACACTGATGAAGTTGATGGAAAAGTGGGGTCTGGTGCACTGTTCATCAAGGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGCAGACATGAAGAATTACTCCACATATCCAGAATTATCTTCTGCTCTAGAAAATATGTTCAGCTGTTTTACTATACGTCAATTTGAATCTCATGGAATGCTAGGCAGGGAGATGCTGAATGAAACCAAACTGAAGGACCTTATTCATGGATCTGAATATGTTCTTACCTATGAGGACAAAGATGGTGATTGGATGCTCGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAGGAGGATGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCTAGAGCTGTTGAAAAAAGTAAGAGCAGAAACTAG 1071 0.4332 MSLPVLGIGEEEGKSNVTLLVSSTTMGLKERNYIGMGGLSDCSSVDSSVPSFSDESRSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQFDEKPLFPLCPSADDHHSSAKIAVLGNKRGFSDAMNGISEGKYLVNSDPNPILSHRPPKPCSTPENVGAQQAKMKEVATTKAGLERPHAVKETRSNLDGSANNNSSAPATKAQVVGWPPIRSFRKNSLATNSKNTDEVDGKVGSGALFIKVSMDGAPYLRKADMKNYSTYPELSSALENMFSCFTIRQFESHGMLGREMLNETKLKDLIHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCRRMRIMKSSDAIGLAPRAVEKSKSRN. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00792 356 Pfam AUX/IAA family 65 347 IPR033389 -
Seca3g00792 356 SUPERFAMILY CAD & PB1 domains 234 337 - -
Seca3g00792 356 ProSiteProfiles PB1 domain profile. 236 338 IPR000270 GO:0005515
Seca3g00792 356 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 60 343 IPR003311 GO:0005634|GO:0006355
Seca3g00792 356 Gene3D - 231 350 - -
Seca3g00792 356 FunFam Auxin-responsive protein 231 348 - -
Seca3g00792 356 MobiDBLite consensus disorder prediction 169 183 - -
Seca3g00792 356 MobiDBLite consensus disorder prediction 169 206 - -
Seca3g00792 356 MobiDBLite consensus disorder prediction 185 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00792 Seca-Chr3 13125486 13130811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00792 238 350 B3 DNA Binding Superfamily AT1G30330 26.549 1.59e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca3g00792 AUX_IAA 2.1e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00792 K14484 - gmx:100815447 531.176