Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00783 ATGCAAGGCAAGGATCATCGAAGAACACGTGTAGCAAATGCTTATTTCTCCCTATTTATGGCTATTGGTAATATTCTTGGATATGCAACTGGATCATACAGTGGTTGGTACAAGGTCTTTCCTTTCACACTTACCCCTGCATGCAATATTAGTTGTGCAAATCTCAAGTCTGCTTTCTTTCTCGACATTGGTTTTATTATGATCACCACCTATATCAGCATCGTGGCAGCTCATGAAGTGCCTCTAAGATCCAGTGGAGGGGGCCATGTCGAAGAAGCAACAGGGGAGTCAGGTAGTGCAGAAGAAGCTTTCCTATGGGAGCTTTTTGGGACATTCAGATATTTTTCAACCCCTATATGGACAATATTGTCTGTTACTGCTCTAACATGGATTGGGTGGTTTCCATTTCTTCTATTTGATACTGATTGGATGGGACGAGAGATTTATGGTGGTGAGCCAAATGAAGGCCCTAATTATGATATTGGAGTTAGAATGGGGGCACTTGGTTTATTGCTCAATTCAGTTGTTCTTGGAATAACATCAGTACTCATGGAGAGGTTATGTAGGAATCGGGGGCCTGGGTTTGTGTGGGGAATCTCAAATATCCTAATGGCTGCCTGCTTTATTGGAATGCTTGTAGTAACCTATGTGGCGAATAACATTGGTTATATTGGCAAAGATCTACCACCAATCAGCATTATCATAGCTGCACTGACAATCTTTACCATTCTTGGGTTTCCACTGGCAATCACTTACAGTGTTCCATATGCCTTAATTTCCACACATATTCAGCCATTGGGGCTTGGCCAAGGATTGTCAATGGGAGTCCTGAATCTTGCAATAGTGGTCCCACAGATGGTGGTGTCCTTGGGAAGTGGACCATGGGACCAACTATTTGGCGGAGGAAACTCTCCAGCCTTTGCTGTGGCGGCTGTTGCAGCCCTTGTCAGTGGACTCATAGCTGTCTTTGCTATTCCACGATCTAGTACTCAAAAGCCTAGAAGCAATGTTGGGGAATTTCTTCATTGTAAATCTGTCCCACCTGTGAAAGACGTTGCTTCTAAATGCGGTGGGAAAATAGTTGGGGCATCTTCTATAGGTTCCAAAGTCATAGCAGAAATGAAGGCCATAGGGAAGATATCAGGCCCAACAGCCATAACTGGTTTACTCTTATATTCAAGAGCTATGATCTCTATGCTTTTCCTTGGCTATCTTGGTGAGATGGAACTAGCAGGAGGCTCTCTCTCCATTGGTTTTGCTAACATCACTGGCTACTCAGTGATCTCTGGATTAGCCATGGGAATGGAACCAATTTGTGGACAAGCCTATGGAGCAAAACAATGGAAGATACTTGGCTTGACCCTTCAAAGAACTGTACTCCTTCTTCTCTCAACATCCATCCCCATCTCATTCACTTGGCTTAACATGAAGAGAATCCTCTTATGGTGTGGTCAAGACCAAGAAATATCATCAATGGCACAAACTTTCATTCTCTTCTCTATACCTGACCTTTTCTTCCTCTCACTTCTCCACCCTCTTCGAATTTACCTCAGAACTCAAAGCATCACGTTACCCTTAACATATTGCTCAGCCATCTCTGTTTTGCTTCATGTCCCTCTCAATTTCCTCTTAGTAGTCCATTTCAAAATGGGTATAGCAGGGGTAGCCACAGCAATGGTTTGGACTAATCTCAACCTTTTTCTTTTCCTTTCCTCCTTTGTTTACTTCTCTGGTGTATATAAAGACTCATGGGTTTCACCAAGCATGGATTGCCTCAGGGGATGGTCTTCTTTGCTTGCACTTGCTATTCCAACTTGTGTTTCTGTTTGTTTAGAGTGGTGGTGGTATGAGCTCATGATAATGCTGTGTGGACTTTTGGTCAACCCAAAAGCCACCATTGCTTCAATGGGGATTCTAATACAAACAACATCTTTGGTCTATGTTTTCCCATCTTCACTTAGTCTTGGTGTTTCCACCAGAGTGGGGAATGAGTTAGGAGCAAATCGCCCTGCAAAAGCACGCATTTCCATGATAGTGTCACTCTTATGTGCTTTTGCTTTAGGCATCACAGCCATGCTGTTTACCACTTTGATGAGGCACCAATGGGGAAGGTTCTTCACCAATGACCAAGAGATTCTCAAGCTTACAGCCACAGCATTGCCAATTGTTGGTCTTTGTGAGCTTGGAAACTGTCCACAGACCACAGGTTGTGGAGTCCTTAGAGGCAGTGCAAGACCCACCATTGGAGCAAACATCAATTTGGGCTCATTTTATTTGGTGGGTATGCCAGTGGCTGTCCTTTTTGGGTTTGTGGCTAAACTGGGTTTTGCAGGGCTTTGGGTTGGGTTACTTGCAGCACAAGCCTCTTGTGCAGGGCTCATGCTATTTGTTCTCTTCACAACAGATTGGAATGCACAAGTTGAAAGGGCAAAGGAGCTAACAAAAACTTCAGGAACTGATAATTCTGCTGCTACAATGTTCACAAAAACAACACAGTGTAACAACAACAACAACAATCATCATCATGATGCTTGTCTTCAAGAGATAGTAATCACAGATGATGAGTTTACCAAGACAGCCTCACTGGAAACAGACCCACTCATCATACCCACCCACTAG 2619 0.436 MQGKDHRRTRVANAYFSLFMAIGNILGYATGSYSGWYKVFPFTLTPACNISCANLKSAFFLDIGFIMITTYISIVAAHEVPLRSSGGGHVEEATGESGSAEEAFLWELFGTFRYFSTPIWTILSVTALTWIGWFPFLLFDTDWMGREIYGGEPNEGPNYDIGVRMGALGLLLNSVVLGITSVLMERLCRNRGPGFVWGISNILMAACFIGMLVVTYVANNIGYIGKDLPPISIIIAALTIFTILGFPLAITYSVPYALISTHIQPLGLGQGLSMGVLNLAIVVPQMVVSLGSGPWDQLFGGGNSPAFAVAAVAALVSGLIAVFAIPRSSTQKPRSNVGEFLHCKSVPPVKDVASKCGGKIVGASSIGSKVIAEMKAIGKISGPTAITGLLLYSRAMISMLFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQWKILGLTLQRTVLLLLSTSIPISFTWLNMKRILLWCGQDQEISSMAQTFILFSIPDLFFLSLLHPLRIYLRTQSITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVATAMVWTNLNLFLFLSSFVYFSGVYKDSWVSPSMDCLRGWSSLLALAIPTCVSVCLEWWWYELMIMLCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPAKARISMIVSLLCAFALGITAMLFTTLMRHQWGRFFTNDQEILKLTATALPIVGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAVLFGFVAKLGFAGLWVGLLAAQASCAGLMLFVLFTTDWNAQVERAKELTKTSGTDNSAATMFTKTTQCNNNNNNHHHDACLQEIVITDDEFTKTASLETDPLIIPTH. 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00783 872 CDD MATE_eukaryotic 373 809 IPR045069 GO:0042910|GO:1990961
Seca3g00783 872 Pfam MatE 604 766 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Seca3g00783 872 Pfam MatE 383 543 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Seca3g00783 872 SUPERFAMILY MFS general substrate transporter 10 328 IPR036259 -
Seca3g00783 872 Gene3D MFS general substrate transporter like domains 116 336 IPR036259 -
Seca3g00783 872 PANTHER MULTIDRUG RESISTANCE PROTEIN 369 803 - -
Seca3g00783 872 NCBIfam MATE family efflux transporter 389 780 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00783 Seca-Chr3 12873263 12883948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00783 4 333 Sucrose Transporter Gene Family AT1G09960 69.394 1.85e-152 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00783 K03327 - rcu:8288072 816.994