Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00778 ATGCTCGCCGCTTTCTCTTCCCCGCGACTCTTCTCTCTTCTCCTCCTTCTTCTCTTCTCATTCATCTCACCACTCACCAGTGTCAAACCTGACGAGCGTCAAATCCTACTGAACCTAAAATCCTCCCTTCACAAATCCAATTCCAATCTCTTTGACTCATGGAATGCCACCAATTCCATCTGCAAATTCCACGGCATCACTTGCAATTCCCTCAATTCCGTCACCGAAATCAACCTTCCCAATCAAAAACTCTCTGGACTCCTCCCTCTAGACTCCCTCTGCAACCTCCAATCACTCGAGAAGCTAGCCTTGGGTTTCAACAATTTATACGGCAGCGTTTCAGAGGACCTTAGAAACTGCGTCAAGTTACGGTACTTGGACTTAGGCAACAACGTTTTCTCAGGACCTTTCCCTGACATATCTCCCCTCAAAGAATTACAGTATCTGTTTCTGAACAAAAGTGGATTCTCTGGAACTTTTCCATGGCAGTCCCTGTTGAACATGACGGGTCTGTTACAGTTAAGCGTTGGAGATAACCCTTTCGATCTCACTCCTTTTCCTAAAGAGGTGTTGAGCCTCAAGAGGTTGAATTGGCTCTACCTTTCCAATTGCACACTTGGAGGGAAATTACCGGTTGGGATCGGTAATCTCACGGAGCTTACCGAATTGGAATTCTCCGATAATTTCATCACCGGTGATTTTCCCGCGGAGATTGTGAACCTTCGCAAACTGTGGCAGCTTGAATTCTACCACAATTCCTTCACCGGGAAGATTCCAAAAGGATTGGGAAATCTCACTGGTCTCAACTATTTCGATGGTTCCATGAACAATCTCCAAGGGGATCTCTCTGAATTGAGGACGTTGACGAACCTTATTTCTCTTCAACTTTTCGAGAACAACTTGTCTGGTGAGATTCCACCTGAGTTAGGCGAGTTCAAACACCTCCGCGGTTTGTCCCTGTACAGGAACAAATTGACCGGTCCAATTCCTCAGAAGATTGGTTCGTGGTCCGATTTTGATTTCATCGACGTGTCGGAGAATTTCTTGACCGGTCCAATTCCGCCGGATATGTGCAGCAAGGGAAAGATGACGGCGTTGCTGGTGCTTCAGAACAATCTCACCGGCGAGATTCCGGCGAGCTATGGAAACTGTTTGACCATGAACCGGTTCAGGGTAAGCAGAAACTCGCTCTCGGGAACTATCCCTCCAGGGATATGGGGATTTCCCAACGCTGAGATAATCGATATTGAAATGAATCAGTTAGAAGGTTCGGTTACTTCAGATATCCAGAACGCTAAAACACTGGCTAGCATATTCGCGAAGAGGAACCGGTTAACCGGTGAATTACCGGAAGAAATCTCCAAAGCGACGTCGTTGGTGACTATCGACCTAAGCGAGAATCAAATCTCGGGGAACATTCCAGAAGGAATTGGAGAGCTCAAACAACTCGGTAACCTTCATTTACAGAACAATAAGCTAACAGGTTCAATACCAGAGTCGTTAGGTTCTTGTAACAAACTCAACGACCTTGATCTATCAAGAAACTCCCTCTCTAAAAAAATCCCTTCCTCCTTAGGTTCCTTACCTGCTTTGAATTCCCTAAACCTGTCACAAAACGAACTCTCCGGTGAAATCCCGGTGAGTTTAGCATCCCTCAGGTTAAGCCTCTTTGATTTGTCACAGAATCAGTTAAAAGGTCCAATTCCACAAGCTTTGACCATTCAAGCTTACAACGGAAGCCTCACTGGAAACCCTGGTCTCTGCACCTTTGATGCTATAAGCTCCTTCCCGCGTTGCTCTCCGAACTCTGGCATGTCAAAAGACATGCGTGCCCTTGTGATTTGCTTCTCAATTGCTTTAATCGTGCTTCTCTCGTGTTTGGGGCTCTACTTGCGGTTGAGGAAGAAGAGGGAAGACGAGGAAGAGGAGAAGAAATACGGAAAAGGAGGTCGTTCCCTTAAGGAAGAATCTTGGGATGTTAAATCGTTCCACGTGCTGAGTTTCACTGAGGATGAGATTCTTGATTCCATTAAACAGGAGAATCTAATAGGGAAAGGTGGTTCAGGGAATGTGTATAGAGTCACGCTTTCCAACGGGAAAGAACTTGCTGTGAAGCATATTTGGAACACCGATTTCCCTGCACGGAAAAGGTCATGGAGCAGCACTCCTATGCTTGGAAAGCGCGGTGGGAAATCCAAGGAATTCGATGCGGAAGTGCAGACGTTGAGCTCCATAAGGCATGTGAATGTGGTGAAGCTTTATTGCAGTATAACGAGTGAGGATTCAAGCCTCCTGGTGTATGAGTATTTGCCGAATGGGAGCTTATGGGATCGGCTTCACATGAGTGGGAAGATGGAGCTTGATTGGGAAACGAGGTATGAGATTGCGGTTGGAGCAGCGAAAGGGTTGGAGTATCTGCATCATGGTTGTGAGAGGCCTGTGATTCACAGGGATGTGAAATCAAGTAACATTTTGTTGGATGAGTTTCTAAAGCCTAGGATTGCTGATTTTGGACTAGCTAAGATTGTTCAAGCCAACGTTGGTATTGGCAAGGATTCTACTCATGTCATTGCCGGGACCCATGGATACATTGCTCCTGAATATGGATACACTTATAGAGTGAATGAGAAAAGTGATGTGTACAGCTTTGGAGTGGTGTTAATGGAACTGGTAACTGGGAAAAGGCCGATTGAACCAGAATTTGGAGAAAATAAGGACATAGTTAGCTGGGTCCATAGCAAGACACAGAGCAAAGAGAGGTTCAGGAGTGTGGTGGACTCAAGAATTCCAGAGATGTATAAAGGGGAAGCTTGCAAGGTGTTAAGAACTGCAGTGCTCTGTACAGCAACTCTTCCAGCTTTAAGACCTACCATGAGGGCTGTTGTTCAAAAGCTTGAGGATGCTGCGCCTTGTAAATTGGTTGGAATTATCATTAACAAAGATGACGGTGGAAAGAAAATAGGAGTCAACGAGAAGTAA 2979 0.4569 MLAAFSSPRLFSLLLLLLFSFISPLTSVKPDERQILLNLKSSLHKSNSNLFDSWNATNSICKFHGITCNSLNSVTEINLPNQKLSGLLPLDSLCNLQSLEKLALGFNNLYGSVSEDLRNCVKLRYLDLGNNVFSGPFPDISPLKELQYLFLNKSGFSGTFPWQSLLNMTGLLQLSVGDNPFDLTPFPKEVLSLKRLNWLYLSNCTLGGKLPVGIGNLTELTELEFSDNFITGDFPAEIVNLRKLWQLEFYHNSFTGKIPKGLGNLTGLNYFDGSMNNLQGDLSELRTLTNLISLQLFENNLSGEIPPELGEFKHLRGLSLYRNKLTGPIPQKIGSWSDFDFIDVSENFLTGPIPPDMCSKGKMTALLVLQNNLTGEIPASYGNCLTMNRFRVSRNSLSGTIPPGIWGFPNAEIIDIEMNQLEGSVTSDIQNAKTLASIFAKRNRLTGELPEEISKATSLVTIDLSENQISGNIPEGIGELKQLGNLHLQNNKLTGSIPESLGSCNKLNDLDLSRNSLSKKIPSSLGSLPALNSLNLSQNELSGEIPVSLASLRLSLFDLSQNQLKGPIPQALTIQAYNGSLTGNPGLCTFDAISSFPRCSPNSGMSKDMRALVICFSIALIVLLSCLGLYLRLRKKREDEEEEKKYGKGGRSLKEESWDVKSFHVLSFTEDEILDSIKQENLIGKGGSGNVYRVTLSNGKELAVKHIWNTDFPARKRSWSSTPMLGKRGGKSKEFDAEVQTLSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHMSGKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQANVGIGKDSTHVIAGTHGYIAPEYGYTYRVNEKSDVYSFGVVLMELVTGKRPIEPEFGENKDIVSWVHSKTQSKERFRSVVDSRIPEMYKGEACKVLRTAVLCTATLPALRPTMRAVVQKLEDAAPCKLVGIIINKDDGGKKIGVNEK. 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00778 992 ProSitePatterns Protein kinases ATP-binding region signature. 683 705 IPR017441 GO:0005524
Seca3g00778 992 Gene3D Ribonuclease Inhibitor 185 284 IPR032675 -
Seca3g00778 992 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Seca3g00778 992 Gene3D Ribonuclease Inhibitor 285 357 IPR032675 -
Seca3g00778 992 FunFam Receptor-like protein kinase HAIKU2 660 769 - -
Seca3g00778 992 ProSiteProfiles Protein kinase domain profile. 677 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00778 992 SMART LRR_typ_2 193 217 IPR003591 -
Seca3g00778 992 SMART LRR_typ_2 528 552 IPR003591 -
Seca3g00778 992 SMART LRR_typ_2 288 312 IPR003591 -
Seca3g00778 992 SMART LRR_typ_2 96 120 IPR003591 -
Seca3g00778 992 SMART LRR_typ_2 480 504 IPR003591 -
Seca3g00778 992 SUPERFAMILY Protein kinase-like (PK-like) 668 965 IPR011009 -
Seca3g00778 992 SMART serkin_6 677 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00778 992 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 20 965 - -
Seca3g00778 992 SUPERFAMILY L domain-like 276 597 - -
Seca3g00778 992 Gene3D Ribonuclease Inhibitor 358 605 IPR032675 -
Seca3g00778 992 Pfam Protein kinase domain 679 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00778 992 Gene3D Phosphorylase Kinase; domain 1 660 769 - -
Seca3g00778 992 Gene3D Transferase(Phosphotransferase) domain 1 770 973 - -
Seca3g00778 992 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Seca3g00778 992 SUPERFAMILY L domain-like 29 280 - -
Seca3g00778 992 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 770 977 - -
Seca3g00778 992 FunFam Leucine-rich repeat receptor-like protein kinase TDR 285 601 - -
Seca3g00778 992 FunFam Probable inactive receptor kinase RLK902 29 187 - -
Seca3g00778 992 FunFam Leucine-rich receptor-like protein kinase family protein 188 284 - -
Seca3g00778 992 Pfam Leucine rich repeat 482 541 IPR001611 GO:0005515
Seca3g00778 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00778 Seca-Chr3 12800964 12804684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00778 9 981 Receptor kinase-like Gene Family AT1G09970 61.310 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca3g00778 Pkinase 6.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00778 - - gmx:100809356 1554.27