Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00777 ATGGTTCATCTTCATCCATTATTCCTCTTTGTTATTGGACTCATTATTTCCATGACTCAGGTTATCAGCAGCACCAACCAGTCTGAGTTTTTTTCTCTGATGAAAGGGTCTCTCTCTGGGAACTACCCTCTGGATTGGGATGTCACAATTGAGAAACCAGTCTGCAACTTCACTGGAATTACCTGCAACACTAAAGGGAATGTTATCAATCTTGACCTCTCAGGTTGGACACTTTCTGGAAAGTTCCCACCAGATATATGCTCTTACCTGCCAGAATTGCGTGTTCTGCGCTTAGGCCACACAAGGTTCAAGTTTCCTACAGAAAGCATAGTTAACTGTTCTAACTTGGAAGAGCTTAACATGAATCACATGTATCTGACTGGAACACTCCCAGATTTCTCTCCTTTGCAATCTCTTAGGATCCTTGACTTGTCCTACAACCTCTTCACAGGGGAATTCCCCATGTCAGTGTTTAACCTCACAAGCCTTGAGGTGCTAAACTTCAATGAAAATGGAGGCTTCAGACTGTGGCAGCTACCACTGGATATTGACAGGCTGCAAAATCTCAAGGTCATGGTGTTGACAACATGCATGTTGCATGGCCAAATTCCACCATCCATAGGAAACATCACTTCCCTTATTGATCTTGAATTGAGTGGGAATTTCCTCACAGGCCAAATTCCTTCAGAGCTTGGATTGCTGAAGAACTTGCAAGAGCTTGAGCTTTACTATAACCAACACCTTGTTGGTAACATACCTGAGGCCTTAGGGAATCTCACAGAGCTCATAGATTTGGATATGTCAGTGAACAAGTTAACTGGGAGTATCCCAGCTTCTATATGTAGCCTTCCAAAGCTTCAAGTCCTTCAGCTTTACAACAATAGCCTCACAGGAGAAATCCCAGGTGAGATTGAAAACTCAACAAGCTTGAGAATGTTATCTCTTTATGACAATTTCCTTAGAGGACAAGTTCCCAAGAAACTGGGACAGTTCTCAGGTATGGTAGTTCTAGACTTGTCAGAAAACAGCCTATCTGGTCCATTGCCAACAGAGGTTTGCAAGGGAGGTCAGTTGCTCTATTTTCTTGTTTTGGATAACATGTTTTCTGGTGAAATACCAGAGAGTTATGCAAATTGCATGATGTTGTTGAGGTTTCGTGTCAGTAATAACCGTTTGGAAGGCTCAGTTCCCAAGGGACTCCTTGGTTTGCCACATGTTTCAATCATTGATTTGAGTAGTAATAATTTGACTGGTCCAATTCCCGAGATCAATGGAAATTCTAGAAACTTGTCTGAACTGTTCCTACAGAGGAACAGGATTTCAGGAGTCATACCTCCTTCAATCTCTCGAGCCATTAACCTAGTTAAGATTGATTTTAGCTATAACCTTTTGTCTGGTCCAATCCCTTCTGAAATTGGCAACCTGAGAAGGCTTAATTTGCTTATGTTACAAGGGAACAAGCTGAGTTCTTCTATCCCAAGTTCACTTTCCTCATTGGGGTCTCTCAACCTTCTTGATCTCTCCAACAACCTTTTAACAGGGAGCATCCCTGAAAGTCTCTCTGTGTTGCTACCCAATTCTATTAACTTCTCACACAACTTGCTTTCTGGTCCAATTCCTCCTAAATTGATCAAAGGAGGTTTGGTTGAAAGCTTTGCAGGGAATCCTGGTCTGTGTGTGTTACCAGTATATGCTAATTCATCTGATCAAAATTTCCCCATATGTTCACATGGCTACAACAAGGGTAAGAGGATAAACACCATCTGGGTAGCTGGGATATCAGTGGTTTTGATCTTTGTTGGAGCTGTCTTGTTCCTGAAACGTAGGTGCAGCAAAGAGACAGCTGCAGTGGAACATGAGGACACACTGTCTTCTTCATACTTCTCTTATGATGTTAAGAGCTTTCACAAGATCACTTTTGACCAAAGGGAAATCCTTGATTCCTTGGTGGATAAGAATATCATGGGGCATGGAGGGTCTGGGACAGTGTACAAGATTGAGTTGAAAAGTGGTGATATTGTTGCAGTTAAGAGGCTGTGGAGTAGAAAATCCAAGGATTCAGCCCCAGAGGATCGGTTATTTGTGGACAAGGCATTGAAAGCAGAGGTGGAGACACTGGGAAGTATTAGGCACAAGAACATAGTTAAACTCTACTGCTGCTTCACCAGTTTGGATTGCAGCTTGTTGATTTATGAGTACATGCCAAATGGTACTCTATGGGATTCACTGCATAAGGGTTGGATCCTTTTGGATTGGCCTACTCGATATAGGATTGCACTGGGGATAGCACAGGGTCTAGCATACCTCCACCATGATTTGCTTCTTCCTATTATTCATCGAGACATTAAGTCAACTAATATACTCTTGGATGAAGATTACCAGCCCAAGGTTGCAGACTTTGGGATTGCCAAGGTTTTGCAAGCTAGAGGCAGCAAGGATTCCACAACAACTGTTATTGCAGGAACATATGGTTACTTAGCCCCAGAATATGCATATTCACCAAGGGCCACTACCAAAGGTGATGTCTACAGTTTTGGTGTGATTTTGATGGAGCTGTTAACTGGGAAGAAGCCAGTTGAGGCAGAGTTTGGGGAAAACAGAAATATTGTGTTCTGGGTTTCAAACAAAGTAGAAGGCAAGGAAGGAGCTAGACCAAGTGAGGTATTTGACCAGAGATTATCATGTTCATACAAGGATGACATGATTAGAGTGCTTCGAATTGCAATTCGATGCACCTACAAAGCCCCAGCTAGTAGACCAACCATGAAAGAGGTTGTTCAGCTACTGATTGAGGCAGAGCCACGCAGTTCAGATTCTTGCAAGTTGTCAACCAAAGACATGTCAAATGTCACCATAATAAAGAAACCATATGAACTATAA 2880 0.424 MVHLHPLFLFVIGLIISMTQVISSTNQSEFFSLMKGSLSGNYPLDWDVTIEKPVCNFTGITCNTKGNVINLDLSGWTLSGKFPPDICSYLPELRVLRLGHTRFKFPTESIVNCSNLEELNMNHMYLTGTLPDFSPLQSLRILDLSYNLFTGEFPMSVFNLTSLEVLNFNENGGFRLWQLPLDIDRLQNLKVMVLTTCMLHGQIPPSIGNITSLIDLELSGNFLTGQIPSELGLLKNLQELELYYNQHLVGNIPEALGNLTELIDLDMSVNKLTGSIPASICSLPKLQVLQLYNNSLTGEIPGEIENSTSLRMLSLYDNFLRGQVPKKLGQFSGMVVLDLSENSLSGPLPTEVCKGGQLLYFLVLDNMFSGEIPESYANCMMLLRFRVSNNRLEGSVPKGLLGLPHVSIIDLSSNNLTGPIPEINGNSRNLSELFLQRNRISGVIPPSISRAINLVKIDFSYNLLSGPIPSEIGNLRRLNLLMLQGNKLSSSIPSSLSSLGSLNLLDLSNNLLTGSIPESLSVLLPNSINFSHNLLSGPIPPKLIKGGLVESFAGNPGLCVLPVYANSSDQNFPICSHGYNKGKRINTIWVAGISVVLIFVGAVLFLKRRCSKETAAVEHEDTLSSSYFSYDVKSFHKITFDQREILDSLVDKNIMGHGGSGTVYKIELKSGDIVAVKRLWSRKSKDSAPEDRLFVDKALKAEVETLGSIRHKNIVKLYCCFTSLDCSLLIYEYMPNGTLWDSLHKGWILLDWPTRYRIALGIAQGLAYLHHDLLLPIIHRDIKSTNILLDEDYQPKVADFGIAKVLQARGSKDSTTTVIAGTYGYLAPEYAYSPRATTKGDVYSFGVILMELLTGKKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVFDQRLSCSYKDDMIRVLRIAIRCTYKAPASRPTMKEVVQLLIEAEPRSSDSCKLSTKDMSNVTIIKKPYEL. 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00777 959 SUPERFAMILY L domain-like 53 349 - -
Seca3g00777 959 Gene3D Ribonuclease Inhibitor 178 250 IPR032675 -
Seca3g00777 959 Gene3D Transferase(Phosphotransferase) domain 1 734 954 - -
Seca3g00777 959 SMART LRR_typ_2 499 523 IPR003591 -
Seca3g00777 959 SMART LRR_typ_2 136 160 IPR003591 -
Seca3g00777 959 SMART LRR_typ_2 475 498 IPR003591 -
Seca3g00777 959 SMART LRR_typ_2 283 307 IPR003591 -
Seca3g00777 959 SMART LRR_typ_2 331 355 IPR003591 -
Seca3g00777 959 SMART LRR_typ_2 428 451 IPR003591 -
Seca3g00777 959 SMART LRR_typ_2 234 259 IPR003591 -
Seca3g00777 959 SMART LRR_typ_2 90 113 IPR003591 -
Seca3g00777 959 FunFam receptor protein-tyrosine kinase CEPR1 632 733 - -
Seca3g00777 959 Pfam Leucine rich repeat 428 488 IPR001611 GO:0005515
Seca3g00777 959 SUPERFAMILY RNI-like 250 570 - -
Seca3g00777 959 Gene3D Ribonuclease Inhibitor 30 177 IPR032675 -
Seca3g00777 959 SUPERFAMILY Protein kinase-like (PK-like) 634 929 IPR011009 -
Seca3g00777 959 FunFam Leucine-rich repeat receptor-like protein kinase 176 279 - -
Seca3g00777 959 Gene3D Phosphorylase Kinase; domain 1 632 733 - -
Seca3g00777 959 ProSiteProfiles Protein kinase domain profile. 649 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00777 959 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 734 947 - -
Seca3g00777 959 Gene3D Ribonuclease Inhibitor 251 570 IPR032675 -
Seca3g00777 959 PANTHER RECEPTOR-LIKE PROTEIN 55 296 929 - -
Seca3g00777 959 Pfam Protein kinase domain 651 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00777 959 SMART serkin_6 649 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00777 959 FunFam Receptor protein-tyrosine kinase CEPR1 283 569 - -
Seca3g00777 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00777 Seca-Chr3 12745020 12749341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00777 21 935 Receptor kinase-like Gene Family AT5G49660 64.674 0.0 1201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca3g00777 Pkinase 5.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00777 - - lja:Lj1g3v2096140.1 1637.08