Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00774 ATGGCAACCACCAAACCCATTATCAGCATCTCTAGTGTCTCGGAAAGTGAAAAGGAACGTGAATGTGACCTTAACACCTGGGTAGCAACCATGACAAAGGCAAAGTCTTCCGGCTTGCAAACTCTGTATGTCCCTAAGAGAATCAAAGATACATGGTTTGCACATGAGCTGGATTTAATGTTCGTCAAGTATGAGGACGATCCACAGGAAGACTGGGAGTTGATATGGCACAAAGACCATCGCGTGTGCCTCATAGGACACGGATGGTACGAGTTTTGCAAATACCATAACCTCAAGACAAACGACCAGGTTACTTTCACAAAACCATCAGATTCCTACGTTGTCACTGCTCACTGTCACTATCCAGAGAAAACGTTCTTAGTTTGCTTCCCATTTTAG 399 0.4436 MATTKPIISISSVSESEKERECDLNTWVATMTKAKSSGLQTLYVPKRIKDTWFAHELDLMFVKYEDDPQEDWELIWHKDHRVCLIGHGWYEFCKYHNLKTNDQVTFTKPSDSYVVTAHCHYPEKTFLVCFPF. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00774 132 Pfam B3 DNA binding domain 27 107 IPR003340 GO:0003677
Seca3g00774 132 Gene3D - 10 120 IPR015300 -
Seca3g00774 132 SUPERFAMILY DNA-binding pseudobarrel domain 26 112 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00774 Seca-Chr3 12643465 12644235 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g00774 B3 1.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00774 - K19719 lja:Lj6g3v0497350.1 63.5438