Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00734 ATGTCCACTGATAAGGCTGGAAGCTCGAGACAAAATAGGAGGGTTGATCGTTTCGTAGCTAAGTTGACCCCTAATGAGGATATGGTGTTTATAGAGAATAAATTTTGGTTGAAGTTTCAAGGTGAAATTAGGGGTCGAAATGTTATCCTAATGGACCCTGCTGGGTTTACTTTTAATGTGTCTGTAGAGTTCCCTGGGTATAATGGGGTTGGAATTATGACTGGAGTTGAAAACATTGTTAGTCGCTATAACTTGGTTGAGAGTTATTGGGTGTTATTTACATATAAAGGGAATTGTGAGTTTGACATTAGAGTAGTGAATGGAAATGTGGAGGTCAATTATCCTAGGGTTGAAACTGATGAAGATGTTGATGTCCAACCTGTGGAGTATGAGGAGGACCCTGAGGAGCCCCTATTTATGTGGGAAGTTACTTTGACAAAGGCTGCTGCATCCGGTGCTAACGCTTTGCTCATACCTGCTAGGATTGTGAGGGACATATTGGACAATGATCAGGAAGTTGTGACTGTTATAGATGAGAGTGGTGAATTAATTCCATGCAAGGTTCTGAAGCCTAAAAGACGACCAAGTGAGCGGTACCTATCCAGTGGGTGGTATGAGTTTATTCGGGGAAAGAAATTGAAGGTTGGGGATAAGATAAGATTTTACTCAGATGATAGTATGGAATCTTTGTCTGCGGTTGTAGAACGCATTTGA 714 0.4132 MSTDKAGSSRQNRRVDRFVAKLTPNEDMVFIENKFWLKFQGEIRGRNVILMDPAGFTFNVSVEFPGYNGVGIMTGVENIVSRYNLVESYWVLFTYKGNCEFDIRVVNGNVEVNYPRVETDEDVDVQPVEYEEDPEEPLFMWEVTLTKAAASGANALLIPARIVRDILDNDQEVVTVIDESGELIPCKVLKPKRRPSERYLSSGWYEFIRGKKLKVGDKIRFYSDDSMESLSAVVERI. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00734 237 SUPERFAMILY DNA-binding pseudobarrel domain 137 229 IPR015300 -
Seca3g00734 237 Gene3D - 119 236 IPR015300 -
Seca3g00734 237 ProSiteProfiles B3 DNA-binding domain profile. 141 237 IPR003340 GO:0003677
Seca3g00734 237 SUPERFAMILY DNA-binding pseudobarrel domain 17 107 IPR015300 -
Seca3g00734 237 SMART B3_2 18 109 IPR003340 GO:0003677
Seca3g00734 237 SMART B3_2 141 236 IPR003340 GO:0003677
Seca3g00734 237 Pfam B3 DNA binding domain 142 229 IPR003340 GO:0003677
Seca3g00734 237 CDD B3_DNA 137 226 IPR003340 GO:0003677
Seca3g00734 237 Gene3D - 9 110 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00734 Seca-Chr3 11683353 11686056 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g00734 B3 9.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00734 - K17108 han:110870408 62.7734