Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00718 ATGCCTGAGCTGCGTACCCGAGCACGCAGAAACCGCCGTGTAGCTAACGATAACTTGAATCCGATTGCCCGGCCTCACTCACCGGCGGCTGCCGGAGCTCGCCTGAGGAAGAGAACTGCCGCTGCTACGCAGGCCAGGAGGAACCGGAGGCAGAAAGCGATCGCCGCAGATGAAATCGGTAATATTGTGAACAACAACGACGACGGAGCCGTTCGTGATACCAGAGCCAAGGAGTTGAAAGAGGAACAAGTAGAGAAGAAGCAGCAGCATCCGCCTGGGGGGTTTTTGGAGTGGAAGCCATGGATGAGTACGACAGTGGTGGCCGCAGCGCCGATAAGGCTCCCGGCACCGATGACGAGGGCACCACACCTCCCCTTCCCGAGAAGGAATGTGCAAAGCGAAGCTATATTTGTTTCTTTTTCATTCCACTTTCTGATAAGCTTGCAACAAAGCTCGGTCCAGGTTGGTGGTTCCCCTTTATACAAAATCGAGAGAAAACTTGGTAAGGGAGGATTTGGACAAGTCTATGTTGGTCGGCGAGTAGGAGCTGGTTCCGGTGCAGTTGAGGTAGCATTAAAATTTGAGCATAGAAGCAGCAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAGGTTTACAATGCCTTAGGTGGTAGTCATGGTGTTCCAAGAGTCCATTACAAGGGGCGGCAAGCTGACTTCTATATCATGGTCATGGATATGCTTGGTCCCAGTCTATGGGATGTTTGGAATAACAACTCACAAACGATGTCTACTGAAATGGTGGCTTGTATTGCTATTGAGGCTATTTCTATATTAGAGAAGATGCACTCTAGAGGGTATGTGCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGGACCCCAGGAACTCCTGATGAGAAAAAGTTGTTTCTGGTTGATCTTGGGTTAGCAACTCGGTGGCGTGATAGTTCAACTGGCCTTCATGTTGATTATGATCAGCGTCCTGATGTATTTAGGGGCACAGTTCGTTATGCTAGTGTACATGCTCATCTCGGTAGGACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACACTTGTCTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCAACTTCTCCAGAAAATCTCTGTTGCTTTTGTCCTCAACCTTTTCGGCAGTTTGTTGAATATGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTTGATGGAATTGTGGGTCCAAATCCTGACATTAGGCCAATAAATACTGAGGGTGCTCAGAAGGTTGGACAAAAGAGAGGGCGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAAAAGGTTCGAATGGGAATGCCAGCAACGCAATGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTACAATGTAGCTGATGTGCGGCTGGCCCAACACATTGACAAAGGAAATGAAGATGGTTTATTTATCAGCAGTGTGGCTTCTTGTTCTAATCTTTGGGCTCTAATCATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCTACCCACTTTCTTCACAAGGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCTGGAGCTAATAATGGGTGCTCATTGGTTGTGATGTCTAAAGGTTCAAGTCCAATTCTTCATGCATTGTGTATTTGGGATGGCAATAGTTGGCTTGACTTTGATGATAACCTGTTTTGCATTAACTTCTGTTGTCTCACTTTTATTGGCGGATTATTGTTCCTTTTAGGGACCCAGTATTTGCAGCAATCCTACAAAGTCAGCGATTCATTCCCATTTAAGTGGATCAACAAAAAATGGAGAGAGGGGTTTTATGTCACTGCCATGGCCACTGCTGGCACTCGATGGGCAATTGTTATGTCCCGCGGTGCTGGATTTTCAGACCAGGTTGTCGAACTTGATTTCCTGTATCCCAGTGAAGGTATTCATCGGAGGTGGGATAATGGTTACCGCATCACCTCAACTGCTGCAACATGGGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAGCTGATGAAACTCAAGAGACACTCCGCACATCTGCTTTTCCTAGCACTCATGTGAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACAGTTTCGTAA 2280 0.4566 MPELRTRARRNRRVANDNLNPIARPHSPAAAGARLRKRTAAATQARRNRRQKAIAADEIGNIVNNNDDGAVRDTRAKELKEEQVEKKQQHPPGGFLEWKPWMSTTVVAAAPIRLPAPMTRAPHLPFPRRNVQSEAIFVSFSFHFLISLQQSSVQVGGSPLYKIERKLGKGGFGQVYVGRRVGAGSGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQADFYIMVMDMLGPSLWDVWNNNSQTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGTPGTPDEKKLFLVDLGLATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPENLCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKVGQKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLAQHIDKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYELSTHFLHKEWIMEQWEKNYYISAIAGANNGCSLVVMSKGSSPILHALCIWDGNSWLDFDDNLFCINFCCLTFIGGLLFLLGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS. 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00718 759 SUPERFAMILY Protein kinase-like (PK-like) 161 434 IPR011009 -
Seca3g00718 759 FunFam casein kinase 1-like protein HD16 146 473 - -
Seca3g00718 759 PANTHER CASEIN KINASE-RELATED 158 725 - -
Seca3g00718 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Seca3g00718 759 Gene3D Transferase(Phosphotransferase) domain 1 150 481 - -
Seca3g00718 759 ProSiteProfiles Protein kinase domain profile. 161 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00718 759 MobiDBLite consensus disorder prediction 455 472 - -
Seca3g00718 759 MobiDBLite consensus disorder prediction 451 472 - -
Seca3g00718 759 MobiDBLite consensus disorder prediction 1 52 - -
Seca3g00718 759 ProSitePatterns Protein kinases ATP-binding region signature. 167 193 IPR017441 GO:0005524
Seca3g00718 759 CDD STKc_CK1 161 430 - -
Seca3g00718 759 SMART serkin_6 161 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00718 759 Pfam Protein kinase domain 161 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00718 Seca-Chr3 11367681 11375479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00718 166 430 MAP Kinase Kinase Kinase AT5G50180 24.101 2.63e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Seca3g00718 Pkinase 6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00718 - - gmx:100779382 1095.49