Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00709 ATGGCCAAAGGAATTCCAACAACAACATTTTCTTCAAAGTCTCTCATTTTTATCATGTGCCTCTGCTTCATGTTCATGCTAAACTTCCACTCATCCCATGGAGAAGAAGAACATGAGCTTCTGTTATCCTTCAAAGCTTCCATCCACAACGACCCACTTCACACTCTCTCCAACTGGGTCAGTTCCTCTGTCACTCTCTGCAAGTGGCATGGCATCACCTGTGACAACTCTTCCCACATTAACGCTGTGGTGCTCTCAGGGAAAAACATCTCTGGCGAGGTTTCTTCCACCATTTTTCAACTGCCACACGTTACAAGCCTTGACCTTTCCAACAATCAGCTTGTTGGGGAAATCTCTCTCATCAACTCTCCTTCTCTCTCCCCACTCCGTTACCTCAATCTCAGCAACAACAACCTCACGGGTTCTCTGCCTCAATCCTTGTTTTCCGCGTCGTTTTTCAACCTCGAAACTCTGGATCTCTCCAACAACATGTTTTCAGGGAAGATACCAGACCAAATTGGATTTCTTTCCAGCCTAAGGTACCTTGATCTTGGAGGAAACGTTTTGGTGGGAAAGATTCCAAATTCCATCATCAACCTGACGACCTTACAGTACCTGACTTTAGCTTCAAATCAATTAGTGGGTGAAATCCCTGCAGAGATAGGCCTAATGAAAAGCTTGGAGTGGATTTATTTGGGTTACAACAACCTTTCAGGTGAGATACCAAGTAGCATTGGGGAGTTATTTTCCTTGAACCACCTTGATCTTGTTTACAACAACCTCACTGGAAAAATTCCTGAATCTCTTGGAAACCTCACTGGTCTTCAATATCTCTTCCTCTACCAGAACAAGCTCACAGGTCAAATTCCTCCATCCATTTTCGAATTGAGAAAGCTCATTTCTCTTGATCTCAGTGATAACTCTCTATCTGGTGAGATTTCCGAGCTTGTGGTCAATCTCCAGAAGCTGGAGATTCTTCACCTTTTCTCAAACAACTTCACCGGAAAGATACCAAAAGCTCTATCATCTTTGCCTCGCCTTCAGGTTCTTCAGCTCTGGTCAAACAGATTAACTGGTGAGATTCCAGAGGAGCTAGGAAAGCATAGCAACCTCACTGTTTTGGACCTCTCTTCCAACAACCTCACAGGGAATATTCCAAACAGCTTATGTGCCTCTGGAAATCTCTATAAGCTCATCCTCTTCTCCAACTCTTTCAAAGGAAAAATTCCACATAGCTTAAGCTCTTGCAGAAGCTTAGGCAGAGTGCGCCTCCAAAACAACAAGCTCTCTGGTGAATTACCATCGGAAATGACCAAACTGCCACAGATATACTTCTTGGATATCTCTGGTAACGAACTTTCTGGAAGGATCGATGATAGAGAGTGGAACATGCCGGCGCTTCAAATGCTCAGTTTGGCTAATAACAACTTCTCAGGGAAGCTACCAGACTCTTTTGGTAGTAACAAACTAGAAGATTTGGATTCATCACAGAATCAATTCTCAGGGTATATTCCAATCGGTTTCAGAACGTTATCAGAACTCGTGCAATTGAAGCTAAGCAATAACAACCTCTTCGGGAACATTCCAGAAGAACTCTGTGAATGCAAGAAGCTTGTTGTTCTAGACCTAAGTCACAATCAACTCACCGGTCAGATTCCGGTCAACCTCGCCGGCATGCCGGTGCTCGGAATGCTTGACCTATCGGAAAATGAATTATCCGGTGAGATTCCAAAGAATTTAGGAAGTGTGGAATCTCTTGTTCAGGTGAACATTTCACACAACAGATTTCATGGAAGTTTACCTTCTACTGGAGCTTTCCTTGCCATCAATGCCAGTGCGGTTACCGGTAACAGCCTCTGTGACCGTGACGGTGACGTTTCAAGCGGTTTGCCACCGTGCAAAAGCGATCAGAATCCAACTTGGTTGTTCGTTTTGCTGTGTTTTCTACTCGGTCTGGTTGCGTTTGCTGCAGCTGCTTTTCTCGTCGTTTTCGTTAAACGACGAAGGAGTAATTTGGAGATGCGTAGAGTGGAAAACGAAGACGGCACTTGGGAGATGCAGTTTTTCGATTCTAAGGCATCGAGAGTGATAGGCATGGACGACGTTTTGTCGTCTGTTAAAGAAGGGAAAGTGGTTTCGAAAGGAAGGAACTGGGTTTCATACGAAGGGAAGTGCATGCGAAACGACATGCAGTTTATGGTGAAAGAAATGGGCGATCCGAATTCTCTTCCGCTGAGTTTTTGGGACGATATGGTGAAGTTTGGGAAGCTAATTCGTCACCCGAATATCGTTAAGCTTATTGGAATATGTAGGTGTGGTAAGAGAGGGTACTTGGTGTACGGGAATGAAGAGGGGAATAATTTAAGCCAAATTCTCAACGGTTTGAGCTGGCAACGGCGACGGAAAATTGCCGTGGGGATTGCAAAAGCACTCAAGTTCTTGCATTGTAACGGTTCATGGATCGGTTTGGTTAATGAGGTGTCACCGGAGATAGTTTTGGTCGACGGCAAAGGCGTCCCTCGCCTGAAGCTTAACCCTCCCGGAATGGCATGTTTGGATGTCAAGTCACCCTACGTTGCCCCAGGTAAGGCAAGGATGAGGAAAGATGTGACAGAGAAGAGTGAGATTTATGGATTGGGAGTTATGCTGATTGAGTTGTTGACGGGAAGAAGCCCGATGGATACAGAAGGCATGCAGAATAGCATTGTGGAGTGGGCCCGTTACTGTTACTCAGACTGTCATCTTGACACGTGGATAGATCCTGTGATGAAGGGTGGAGATGCAAATGCAGTGGGATATCAGAACGACATCGTTGAGATGATGAATCTTGCACTGCACTGTACTGCTACTGATCCCACCGCAAGGCCATGCGCGAGAGACGTACTCAAAGCCCTAGAGACTGTTCACAGTACCAACACTTTTTGTTGA 2928 0.4522 MAKGIPTTTFSSKSLIFIMCLCFMFMLNFHSSHGEEEHELLLSFKASIHNDPLHTLSNWVSSSVTLCKWHGITCDNSSHINAVVLSGKNISGEVSSTIFQLPHVTSLDLSNNQLVGEISLINSPSLSPLRYLNLSNNNLTGSLPQSLFSASFFNLETLDLSNNMFSGKIPDQIGFLSSLRYLDLGGNVLVGKIPNSIINLTTLQYLTLASNQLVGEIPAEIGLMKSLEWIYLGYNNLSGEIPSSIGELFSLNHLDLVYNNLTGKIPESLGNLTGLQYLFLYQNKLTGQIPPSIFELRKLISLDLSDNSLSGEISELVVNLQKLEILHLFSNNFTGKIPKALSSLPRLQVLQLWSNRLTGEIPEELGKHSNLTVLDLSSNNLTGNIPNSLCASGNLYKLILFSNSFKGKIPHSLSSCRSLGRVRLQNNKLSGELPSEMTKLPQIYFLDISGNELSGRIDDREWNMPALQMLSLANNNFSGKLPDSFGSNKLEDLDSSQNQFSGYIPIGFRTLSELVQLKLSNNNLFGNIPEELCECKKLVVLDLSHNQLTGQIPVNLAGMPVLGMLDLSENELSGEIPKNLGSVESLVQVNISHNRFHGSLPSTGAFLAINASAVTGNSLCDRDGDVSSGLPPCKSDQNPTWLFVLLCFLLGLVAFAAAAFLVVFVKRRRSNLEMRRVENEDGTWEMQFFDSKASRVIGMDDVLSSVKEGKVVSKGRNWVSYEGKCMRNDMQFMVKEMGDPNSLPLSFWDDMVKFGKLIRHPNIVKLIGICRCGKRGYLVYGNEEGNNLSQILNGLSWQRRRKIAVGIAKALKFLHCNGSWIGLVNEVSPEIVLVDGKGVPRLKLNPPGMACLDVKSPYVAPGKARMRKDVTEKSEIYGLGVMLIELLTGRSPMDTEGMQNSIVEWARYCYSDCHLDTWIDPVMKGGDANAVGYQNDIVEMMNLALHCTATDPTARPCARDVLKALETVHSTNTFC. 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00709 975 Gene3D Ribonuclease Inhibitor 193 292 IPR032675 -
Seca3g00709 975 ProSiteProfiles Leucine-rich repeat profile. 128 150 IPR001611 GO:0005515
Seca3g00709 975 Gene3D Ribonuclease Inhibitor 294 625 IPR032675 -
Seca3g00709 975 SUPERFAMILY L domain-like 369 619 - -
Seca3g00709 975 SUPERFAMILY Protein kinase-like (PK-like) 706 969 IPR011009 -
Seca3g00709 975 Gene3D Ribonuclease Inhibitor 34 192 IPR032675 -
Seca3g00709 975 PANTHER UNNAMED PRODUCT 154 894 - -
Seca3g00709 975 ProSiteProfiles Protein kinase domain profile. 706 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00709 975 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Seca3g00709 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 328 629 - -
Seca3g00709 975 Pfam Leucine Rich repeat 101 114 IPR001611 GO:0005515
Seca3g00709 975 Pfam Leucine rich repeat 250 309 IPR001611 GO:0005515
Seca3g00709 975 Pfam Leucine rich repeat 345 404 IPR001611 GO:0005515
Seca3g00709 975 Pfam Leucine rich repeat 129 189 IPR001611 GO:0005515
Seca3g00709 975 Pfam Leucine rich repeat 537 596 IPR001611 GO:0005515
Seca3g00709 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 151 242 - -
Seca3g00709 975 Gene3D Transferase(Phosphotransferase) domain 1 784 974 - -
Seca3g00709 975 FunFam Leucine-rich repeat receptor protein kinase EMS1 243 327 - -
Seca3g00709 975 Gene3D Phosphorylase Kinase; domain 1 686 781 - -
Seca3g00709 975 SMART LRR_sd22_2 272 304 - -
Seca3g00709 975 SMART LRR_sd22_2 176 202 - -
Seca3g00709 975 SMART LRR_sd22_2 368 387 - -
Seca3g00709 975 SMART LRR_sd22_2 535 558 - -
Seca3g00709 975 SUPERFAMILY L domain-like 154 434 - -
Seca3g00709 975 SMART LRR_typ_2 369 392 IPR003591 -
Seca3g00709 975 SMART LRR_typ_2 126 150 IPR003591 -
Seca3g00709 975 SMART LRR_typ_2 224 248 IPR003591 -
Seca3g00709 975 SMART LRR_typ_2 559 583 IPR003591 -
Seca3g00709 975 SMART LRR_typ_2 320 343 IPR003591 -
Seca3g00709 975 SMART LRR_typ_2 464 487 IPR003591 -
Seca3g00709 975 SMART LRR_typ_2 272 296 IPR003591 -
Seca3g00709 975 SMART LRR_typ_2 176 200 IPR003591 -
Seca3g00709 975 SMART LRR_typ_2 511 535 IPR003591 -
Seca3g00709 975 SMART LRR_typ_2 344 368 IPR003591 -
Seca3g00709 975 SMART LRR_typ_2 101 124 IPR003591 -
Seca3g00709 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 670 782 - -
Seca3g00709 975 SUPERFAMILY L domain-like 79 189 - -
Seca3g00709 975 ProSiteProfiles Leucine-rich repeat profile. 370 392 IPR001611 GO:0005515
Seca3g00709 975 Pfam Protein kinase domain 755 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00709 Seca-Chr3 11144987 11149094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00709 7 966 Receptor kinase-like Gene Family AT2G25790 52.561 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Seca3g00709 Pkinase 5.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00709 - - gmx:100777118 1422.14