Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00708 ATGATGGCTGTGAGTTCGGCCTGCAAAGATGGGAGCAAGCTGGCAATGGACAACGGCAAGTATGTGAGATACACACCAGAGCAGGTAGAAGCTCTGGAAAGGCTCTACCATGAATGCCCCAAACCCAGTTCCCTTCGCCGCCAGCAACTCATCAGAGAGTGTCCCATTCTCTCCAATATTGAACCAAAACAGATCAAGGTTTGGTTCCAAAACAGAAGGTGCAGAGAGAAGCAGCGGAAAGAATCATCACGGCTGCAAGCAGTGAACAGGAAGCTAACAGCAATGAATAAATTACTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTCGTGTATGAGAACAGCTTTTTCCGCCAACAGACACAGAATGCGACCCTTGCCACCACAGACACGAGCTGTGAGTCGGTGGTAACGAGCGGTCAGCGCCACCTAACACCGCAGCATCCACCGAGGGATGCAAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTGCCCTGGAGTGGCTGCACGTGCCTGCGGCCTTGTGGGTCTTGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCTCTCATGGTTTCGTGATTGCCGAACTGTGGATGTTCTGAATGTGATGTCCACTGGAAATGGAGGAACCATTGAACTCCTTTACATGCAGTTGTATGCGCCAACAACTTTGGCACCAGGTCGTGACTTCTGGTTGCTGCGCTACACATCACTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCACTCAACAACACTCAGAATGGTCCTGCTATGCCACCAGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGTGGATACCTGATTAGACCTTGTGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGGTTTTAGAGCCTTGGAGTGTACCTGAAGTTTTGCGCCCACTCTATGAGTCATCAATGCTTCTTGCTCAGAGGACAACAATGGCGGCTTTACGTCACTTGAGGCAGATTTCTCAAGAAATTTCTCAGCCAAGTGTTACAGGATGGGGAAGAAGGCCTGCAGCCTTGCGTGCACTTAGTCAGAGACTGAGCAAGGGCTTTAATGAAGCTGTGAATGGGTTTGCAGATGATGGTTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCATCACCTAGCAAATTGTTGGGAGTGAACCTTGGCTATAACAATGGATTTCCTGTGAGCAGTTCTGTGCTATGTGCTAAAGCATCCATGTTGTTACAGAATGTGCCTCCAGCTATTCTTCTTAGATTCTTGAGGGAGCACAGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGTCCCTGTAGCTTGCCAGGGGCCCGAGCAGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAACATGAAGAGTTCATGGAGGTGATTAAGCTTGAAAACATGGGCTACTATAGGGATGACATGACTATACCTGGTGACATTTTCCTCTTGCAACTTTGTAGTGGAGTGGATGAGCATGCAGTTGGCACCAGTGCAGAACTTGTTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTCTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTAGCACGGATGGTGCTACTCCAAACCGTACACTTGATCTTGCTTCTGCACTTGAGGTTGGAACCACAGCAAACAAAGCATCTGGTGACAATTCAGGTCATTCTGGGAGCACAAAATCTGTAATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAAGATAATATAGCAACTATGGCACGACAATACGTCCGAAGCATTATTGCATCTGTTCAGAGGGTTTCATTAGCACTCTCTCCTTCACGTTTTGGTTCTCACAGTGCTTTTAACCTACCACCTGGCACTCCTGAGGCACAGACACTTGCTCGTTGGATCTGTAACAGCTATAGGTTCTATCTAGGAGTAGAATTACTAAAGTGTGAAGGCAGTGAGTCCATTCTCAAATCCCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTGAAGGCATTACCTGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTAGAAACAACCCTGGTTGCTCTTCAAGACATCACCCTGGAAAAAATCTTTGATGACAATGGAAAGAAAACTCTGTGCTCCGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGGATCTGTTTGTCAAGCATGGGGAGGCCAATATCGTATGAGAGAGCAGTAGCATGGAAAGTACTAAACGAAGAAGAATCAGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTCTGA 2517 0.468 MMAVSSACKDGSKLAMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATLATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEISQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKLLGVNLGYNNGFPVSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARAGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDIFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSSTDGATPNRTLDLASALEVGTTANKASGDNSGHSGSTKSVMTIAFQFAFEVHLQDNIATMARQYVRSIIASVQRVSLALSPSRFGSHSAFNLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPISYERAVAWKVLNEEESAHCICFMFINWSFV. 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00708 838 CDD bZIP 72 111 - -
Seca3g00708 838 ProSiteProfiles START domain profile. 154 356 IPR002913 GO:0008289
Seca3g00708 838 Pfam MEKHLA domain 697 837 IPR013978 -
Seca3g00708 838 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Seca3g00708 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 838 IPR044830 GO:0003700
Seca3g00708 838 Gene3D - 12 86 - -
Seca3g00708 838 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Seca3g00708 838 SMART HOX_1 17 83 IPR001356 GO:0003677
Seca3g00708 838 SUPERFAMILY Bet v1-like 163 374 - -
Seca3g00708 838 SMART START_1 163 373 IPR002913 GO:0008289
Seca3g00708 838 Coils Coil 85 116 - -
Seca3g00708 838 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Seca3g00708 838 SUPERFAMILY Homeodomain-like 19 81 IPR009057 -
Seca3g00708 838 CDD START_ArGLABRA2_like 158 373 - -
Seca3g00708 838 CDD homeodomain 20 80 IPR001356 GO:0003677
Seca3g00708 838 Pfam START domain 164 372 IPR002913 GO:0008289
Seca3g00708 838 Gene3D - 198 379 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00708 Seca-Chr3 11129328 11136144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00708 16 838 Homeobox Transcription Factor Family AT4G32880 80.602 0.0 1394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g00708 START 4.4e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00708 K09338 - gmx:100815727 1618.98