Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00703 ATGGAAGCACAAGAGTATAATTTCCAGAGCAGCAGCAACTTCTGTTCCCAATTCCCTTCCGACAACATGACAACCACCAACGTTAACGCCTCTTCCGACCACTTCATCGTGGAGGACCTCTTCGACTTCTCCAACGACGACGACGCTGCCATTACCGACGCCACCTTCGACTCTCTTCCCGCCAATTCCATCGACGATTCTCCACCACTCGATCATTCCACCATCAATTCCAATTTCCTCCCCGACATTTCCTCCCGGAATTCCACCGACCCTCATTTCTCCAGTGACCTCTCCGTTCCGTATGATGAACTTGCGGAGCTGGAATGGCTTTCGAAATTTGCGGAGGAATCATTTTCTAGCGAGGACTTGCAGAAACTGCAACTGATATCCGGCATGAAAGCCCAAAACGACGCCGTATCAGAAACCCGTGAGCCCAACCCTGTTATATTTAACCCACAAGTGTCTGTTCCAGCAAAGGCCCGGAGCAAGCGGTCTCGTGGGCCCCCGTGTAATTGGACCTCTCGCCTTCTTGTTCTCTCCCCGACAACAACAACAGCATCACCATCCTCTTCTCAGTCTGATACTGTTACCGTACCAAAGAAGTCTACACCGAGGAAGAGGGACACTGCAGATGGAGGGGAGGGCCGCAAGTGTCTGCATTGTGCCACGGATAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCAAAAACGCTCTGTAATGCGTGTGGTGTCAGGTATAAGTCGGGCCGGCTGGTGCCCGAGTATAGGCCCGCGGCGAGCCCAACGTTCATGCTGACCAAGCACTCCAACTCACACCGTAAGGTGATGGAGCTCCGGCGCCAAAAGGAGATGATGAAGGCCCAGCAACAGCAGTTACTTCAAATGCAACATCATCAGAACATGATGTTTGATGTCTCATCCAACGGTGATGATTACTTGATTCATCAACACGTGGGCCCGGATTTCACACACATGATCTAG 984 0.5264 MEAQEYNFQSSSNFCSQFPSDNMTTTNVNASSDHFIVEDLFDFSNDDDAAITDATFDSLPANSIDDSPPLDHSTINSNFLPDISSRNSTDPHFSSDLSVPYDELAELEWLSKFAEESFSSEDLQKLQLISGMKAQNDAVSETREPNPVIFNPQVSVPAKARSKRSRGPPCNWTSRLLVLSPTTTTASPSSSQSDTVTVPKKSTPRKRDTADGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMLTKHSNSHRKVMELRRQKEMMKAQQQQLLQMQHHQNMMFDVSSNGDDYLIHQHVGPDFTHMI. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00703 327 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355|GO:0043565
Seca3g00703 327 MobiDBLite consensus disorder prediction 175 199 - -
Seca3g00703 327 PANTHER GATA TRANSCRIPTION FACTOR 27 292 - -
Seca3g00703 327 SMART GATA_3 212 262 IPR000679 GO:0006355|GO:0043565
Seca3g00703 327 MobiDBLite consensus disorder prediction 200 215 - -
Seca3g00703 327 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355|GO:0043565
Seca3g00703 327 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 276 - -
Seca3g00703 327 CDD ZnF_GATA 217 264 IPR000679 GO:0006355|GO:0043565
Seca3g00703 327 PIRSF Txn_fac_GATA_plant 6 308 IPR016679 GO:0003677|GO:0005634|GO:0045893
Seca3g00703 327 FunFam GATA transcription factor 205 294 - -
Seca3g00703 327 Coils Coil 276 296 - -
Seca3g00703 327 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355|GO:0043565
Seca3g00703 327 Gene3D - 208 293 IPR013088 GO:0006355|GO:0008270
Seca3g00703 327 MobiDBLite consensus disorder prediction 138 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00703 Seca-Chr3 11033848 11035673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00703 28 327 C2C2-Gata Transcription Factor Family AT4G32890 49.841 4.51e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca3g00703 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00703 - - gmx:100776588 442.965