Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00686 ATGAGTGACTGGGAAAAAAGGTCACACCTTAATAGCATTTCAATTTCACTCTCTTCCTTCTTGTGCATAATGAGTGTTGAATTCTCAAATGATCATAATAGCTCAAGTAGTTCAAACTCATCTGCATCATTTTCTCCCCCACAATCAAAAAAGATAAGAGACTCAAACAAGCACCCAGTTTACCGTGGTGTTCGAATGCGAAATTGGGGGAAATGGGTGTCTGAAATTCGTGAACCAAGGAAGAAATCACGCATATGGTTAGGCACATTCCCTACACCAGAAATGGCAGCAAGAGCACATGATGTAGCTGCTCTTAGCATCAAGGGCAATTCCGCCATTCTCAATTTCCCTGACTTAGTCAACTCTCTCCCACGCCCTGCTTCACTCGCTCCTCGTGATGTTCAAGCAGCTGCAACGAAAGCTGCTCACATGGAATTCCCTGCAACAACATTCTCTTCATCGTCCTTGTTCTCTGCCTCAGATGAACTCAGCGAGATAACAGAGCTTCCTCGGTTGGAAAATAGTGATGAGTGTGGTGAGTTGGATAAGGAGTTTGTGTTGATGGATTCCATTGATGCTTGGAATTGGATGTATCAGCCTCCATGGTTGCAGACCATGGAAGATGTTCTTTGGAGCGCCAGAGAATGGGGGTTGTAA 657 0.446 MSDWEKRSHLNSISISLSSFLCIMSVEFSNDHNSSSSSNSSASFSPPQSKKIRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPDLVNSLPRPASLAPRDVQAAATKAAHMEFPATTFSSSSLFSASDELSEITELPRLENSDECGELDKEFVLMDSIDAWNWMYQPPWLQTMEDVLWSAREWGL. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00686 218 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Seca3g00686 218 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Seca3g00686 218 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Seca3g00686 218 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Seca3g00686 218 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
Seca3g00686 218 FunFam Ethylene-responsive transcription factor 2 59 118 - -
Seca3g00686 218 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Seca3g00686 218 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Seca3g00686 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 37 179 - -
Seca3g00686 218 MobiDBLite consensus disorder prediction 33 57 - -
Seca3g00686 218 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Seca3g00686 218 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00686 Seca-Chr3 10787934 10788590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00686 30 208 AP2-EREBP Transcription Factor Family AT5G11590 57.214 5.38e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g00686 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00686 K09286 - tcc:18587975 230.335