Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00676 ATGAAGACAATATTGGATGCTTTTGAAATTGTCTGCATTCTTTTGAAAGACAGTACTAGAGATGCTATATGCCTTGCCAAGTATACATTTCTGATTTCTACATACACTCATAAGAAGAACCATTTTATCTTTCAAGATCTTCTGAAAATGTGTAATACTAATATCCTTTACCCTTATAAGAACCATTTGTTAATCTTCATGATGGTTCTTTCTCTACTTACCAATGTTCAAGCCCAAGGTAGGCAAGAACAACAGAACATGCCTGATTTACCCCAAAGTGTCCATCCAAGCAAAGGGATTGTAATAATAGCCCTTTCCATAATGTTTGCCATAACATTTCTCTTACTAGCCTATGTTAAATTCTGTCGAGTTAACCAAAACACCAATCTCCAAAACACTCATTTACTACCTAGATCAAGGTCTAGATTTTCTGGGATTGAAAGAGAAGTAATTGAAACACTTCCTTTCTTCAAGTTTTCTTCCCTTAAGGGATTCAAACAAGGTCTAGAATGCACTGTTTGTCTATCCAAATTTGAGGACACAGAGATTCTCAGATTGTTACCAAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGCTTGAAAACCACTCTACATGCCCTCTTTGCAGGTACAGGGTTGAAGCAGGGGACATCAAGAATCTCAACTATTCATTGAGCTCAAGGTTCATGAGAGTTCCTTCAAATCTAACTGAGGACTCAAATCTTGAAATCTTTGTCCAGAGGGAGCCATCTTATAGTAGAGGGTCATCAAAAAGAAGCAAGAGCAAGAAAGAAGAAGTTTTTGTTGATCTTGATCAAGAAGGGAAATTCAAATGTTCCTTCTACTTCCTATGA 864 0.3715 MKTILDAFEIVCILLKDSTRDAICLAKYTFLISTYTHKKNHFIFQDLLKMCNTNILYPYKNHLLIFMMVLSLLTNVQAQGRQEQQNMPDLPQSVHPSKGIVIIALSIMFAITFLLLAYVKFCRVNQNTNLQNTHLLPRSRSRFSGIEREVIETLPFFKFSSLKGFKQGLECTVCLSKFEDTEILRLLPKCKHAFHMNCIDKWLENHSTCPLCRYRVEAGDIKNLNYSLSSRFMRVPSNLTEDSNLEIFVQREPSYSRGSSKRSKSKKEEVFVDLDQEGKFKCSFYFL. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00676 287 SUPERFAMILY RING/U-box 150 217 - -
Seca3g00676 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 221 IPR013083 -
Seca3g00676 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 79 251 - -
Seca3g00676 287 FunFam RING-H2 finger protein ATL43 146 220 - -
Seca3g00676 287 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Seca3g00676 287 Pfam Ring finger domain 170 213 IPR001841 -
Seca3g00676 287 SMART ring_2 171 212 IPR001841 -
Seca3g00676 287 CDD RING-H2_EL5-like 170 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00676 Seca-Chr3 10560000 10561416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00676 96 267 C3H Transcription Factor Family AT2G20030 50.000 3.61e-52 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00676 K10664 - gmx:100816668 308.916