Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00672 ATGGAGAGGATCATCGGAGGAAAATATAAGCTTGGTCGGAAAATTGGGAGCGGTTCATTCGGTGAAATTTATATAGCCTCAAATATTGACACCGCTGAGATTGTCGCCATTAAGATGGAAAACAAGAAGACCAAACATCCACAACTATTGTATGAGGCCAAGTTATACAGTATTCTTCAAGGAGAAAATGGTATTCCAAGTATGAAATGGTGCGGTACTGATGGAGACAATAATGTTCTAGTTATTGATCTTCTGGGAAGGAGTCTTGAGGACTTTTTTGTCTATTGCGGGCGGAAGTTTTCGTTAAAAACGGTTTTGATGTTGGCCGATCAGATGCTTTCGAGAATAGAGTATGTGCATTCCAAGGGGTTTTTGCATAGAGACATCAAACCGGATAACTTCCTTATGGGTCTTGGAAGGAAAGCAAGTCAGGTTTATGCCATTGATTTTGGACTTGCAAAAAGATATAGAGACCCTAAAACAAATAAGCATATTCCTTACAGAGAGAATAAAAACTTAACAGGGACCGCACGTTATGCAAGTTGCAACACTCACATAGGAATTGTTACTGCTTGTATACTGCAAATTTCCAATTATTTTGGTTTTATTTTGTCAGAGCAAAGTCGTCGTGATGATTTGGAGTCTCTTGGCTATGTTCTCATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAAAAGGAAAAATATGACAAGATTTGTGAGAAGAAGTTATCAACTCCCATTGAGATGCTTTGCAAGTCATATCCGGTGGAGTTCGCTTCTTACTTTCACTATTGTCACTCTTTGACATTTGATCAAGACCCAGATTATGGATTCTTGAAGCATTTGTTTCGGGATTTGTTCACCCGTGAAGGATATGACTATGACCATTTATTCGACTGGACCATCCTAAAATATCAGCAGACGCAACATACGAGGAGACAGAATCAATCATCTACTTCAGCTGCTGTGCCTAGCAGTCTAGAACCCGTGGTTGTGGAAAAGCATAAAGGAGTCAATGATTCAGCTCAAATTACTGTAACAAAACTGTTGGCCAATCATGATCGCCCAAGTGCGCATGTGCAGCCTAAGCCATCTAATGTTCAGAATCTGAATGCCAAGAATCAAACCAAGAAGATTGGTGTGACTGGGAACTACAGTCCATCAACTTCATCTGCTATGCCCAAATCCTCTACAGAAAATGTCTCAAAACCAGAAAGGGCCACAGAAACCTCAAACCTGGGTCGTGTATTTGGGAGTAATTCTCGTGTTTCAAGCAGTTGGATTCCTTCACTACGCAGAATTTCTTCAGCCAAATAG 1338 0.4066 MERIIGGKYKLGRKIGSGSFGEIYIASNIDTAEIVAIKMENKKTKHPQLLYEAKLYSILQGENGIPSMKWCGTDGDNNVLVIDLLGRSLEDFFVYCGRKFSLKTVLMLADQMLSRIEYVHSKGFLHRDIKPDNFLMGLGRKASQVYAIDFGLAKRYRDPKTNKHIPYRENKNLTGTARYASCNTHIGIVTACILQISNYFGFILSEQSRRDDLESLGYVLMYFLRGSLPWQGLKAVTKKEKYDKICEKKLSTPIEMLCKSYPVEFASYFHYCHSLTFDQDPDYGFLKHLFRDLFTREGYDYDHLFDWTILKYQQTQHTRRQNQSSTSAAVPSSLEPVVVEKHKGVNDSAQITVTKLLANHDRPSAHVQPKPSNVQNLNAKNQTKKIGVTGNYSPSTSSAMPKSSTENVSKPERATETSNLGRVFGSNSRVSSSWIPSLRRISSAK. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00672 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Seca3g00672 445 SUPERFAMILY Protein kinase-like (PK-like) 4 307 IPR011009 -
Seca3g00672 445 MobiDBLite consensus disorder prediction 366 431 - -
Seca3g00672 445 Pfam Protein kinase domain 9 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00672 445 MobiDBLite consensus disorder prediction 362 431 - -
Seca3g00672 445 SMART serkin_6 9 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00672 445 Gene3D Transferase(Phosphotransferase) domain 1 1 355 - -
Seca3g00672 445 PANTHER CASEIN KINASE-RELATED 8 355 - -
Seca3g00672 445 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca3g00672 445 ProSiteProfiles Protein kinase domain profile. 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00672 445 FunFam CK1 family protein kinase 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00672 Seca-Chr3 10531731 10538139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00672 5 161 EF-hand Containing Proteins AT3G50530 30.723 4.14e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca3g00672 Pkinase 7.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00672 K08960 K08959 gmx:100792736 735.717