Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00658 ATGGAGCAGAGCGAAACGGCGCTGGATTTAGCTCCGCGGAAATTGGCGAGGCAATTGGATTTCACTGCCGTCTGTGGAGGTCCGGCACAGCTGAAACTCCCGCCGCCGACACCGCAGTCCCTGTCTCAACCGATTCTGCGGCCACCATTGCAGTCGCAGCCGCCGCGCTCTCCATCGCAATCACAATTGGATTTGCAGTCACCAGGGCAACGGCTGTGGTTATATTCACCGCCACAGGAGCAACGGCAGAGAACAACACATTCGCAGGTAATGCCGCAACAATTGCAAGCACCGCGGCCACAGCTAGTTTCGCCGGTTCATCGATTTCCGCATCCCGTGCAGAAACTTCCGGTGAAGATGAAGCAAGAGTCTCCTAGATCACAACCTCGAAATAATGTGGAATTAAAGGACAGCACTCCAAAGAAACCAAAACAATGCAACTGCAAAAATTCTCGATGCCTCAAATTGTACTGTGAGTGCTTTGCAGCTGGAATCTATTGTGATGGTTGCAATTGTCTAAATTGTCATAATAACGTGGATAATGAGGCTGCCAGACAAGAGGCTGTTGGAATAACATTGGAACGCAACCCAAATGCTTTCAAACCAAAAATTGCTAGCAGTCCACAAGAACCACGAGATTCTAAGTCTGGGACTCTAGGTTTAGCTGATATTTTAGCTGACTATACTTGTGGTGCATTTAAATGTCTTGAACAAACTCAGGAAGATATGTCTGAAATTCAAGTAATAGGAAAGCACAATAAAGGATGTCACTGTAAGAAATCAGGTTGTCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGCCGAAAGAAGAGCAATTTTTCATGAAGAGGATAATCTAGTTCACATCAGACAAAAAATTAATGCTGTCATTAGTGGAGCTGTTGGATCCTTAGGCTATGGAACCCACATAACACCCAAGAAGAGAAGAATTCAGGAAATATTTTCTGGCAAATCAGGCATAGCTCAAACTGTTAACATGACTGCTCAATACCAACAGGAAATTGATCCTATAGCTTCATCACCATCTCTGTCCACGTCCTTTGTCTCTGACATTTCCAACACAAGAATTTCAGGGTCTTCAAGATCTACATACAAGTCTGTATTGGCGGATGTCCTCCAGACACAGAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCTGGAGTAGCTGCGAAGACAAATTCAGAAATGAGAGACAAAGTAGATCGGCAAATAGGGACTGGGAAATTTGAAGCTTCTATTGCTTCATCAGCTCAATCACCGCAAGAAACTAGAGATACCCACAAGCCTGATTGTGATGATCACATAAATAAAGATGAAGCAAATGCAGTTTATATTGACAATTGTAATAGACCATTGTCACCAGAAACACTAGCATTGATGTGCAATGAACAAGATGAGATGATTTTTGGTGATGGTTCTGCAAATGGAGTGGCATGCAACAGTACATATCAAAATATGATTCAAAAGTCAGCTAATTCTGATGAATGCACTGATGTTTATGGAGAGCAGGAACGGCTTGTCCTGACCAAGTTCTGGGATGTTCTTCGCGGACTCGTTACTCTTGGTAGCATAAAAGAAACAATGTGCTCTTCATTAGCCAGGAAAGAGGTGGGAATCAGGAAAGAACCTGCAGACAATGGCAATGGTGGTACTGAAACTGACACTGGGGCTGAAAAGGGAATTCGTAGCAACTGCGTTGCAAATTGCCCCATTCCAGCGGTTATTGAAATATCTCAGACCAACTATGCAATAACTAATGGACATGGTAATAATGATATTTCATTGAGGTCGCCTGCAAATTTGAATAACTAG 1896 0.4314 MEQSETALDLAPRKLARQLDFTAVCGGPAQLKLPPPTPQSLSQPILRPPLQSQPPRSPSQSQLDLQSPGQRLWLYSPPQEQRQRTTHSQVMPQQLQAPRPQLVSPVHRFPHPVQKLPVKMKQESPRSQPRNNVELKDSTPKKPKQCNCKNSRCLKLYCECFAAGIYCDGCNCLNCHNNVDNEAARQEAVGITLERNPNAFKPKIASSPQEPRDSKSGTLGLADILADYTCGAFKCLEQTQEDMSEIQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSAERRAIFHEEDNLVHIRQKINAVISGAVGSLGYGTHITPKKRRIQEIFSGKSGIAQTVNMTAQYQQEIDPIASSPSLSTSFVSDISNTRISGSSRSTYKSVLADVLQTQNVKNLCSLFVVLSGVAAKTNSEMRDKVDRQIGTGKFEASIASSAQSPQETRDTHKPDCDDHINKDEANAVYIDNCNRPLSPETLALMCNEQDEMIFGDGSANGVACNSTYQNMIQKSANSDECTDVYGEQERLVLTKFWDVLRGLVTLGSIKETMCSSLARKEVGIRKEPADNGNGGTETDTGAEKGIRSNCVANCPIPAVIEISQTNYAITNGHGNNDISLRSPANLNN. 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00658 631 MobiDBLite consensus disorder prediction 26 66 - -
Seca3g00658 631 MobiDBLite consensus disorder prediction 78 100 - -
Seca3g00658 631 MobiDBLite consensus disorder prediction 440 461 - -
Seca3g00658 631 ProSiteProfiles CRC domain profile. 142 291 IPR005172 -
Seca3g00658 631 SMART CXC_2 251 292 IPR033467 -
Seca3g00658 631 SMART CXC_2 141 181 IPR033467 -
Seca3g00658 631 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 254 288 IPR005172 -
Seca3g00658 631 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 144 178 IPR005172 -
Seca3g00658 631 MobiDBLite consensus disorder prediction 31 55 - -
Seca3g00658 631 PANTHER TESMIN/TSO1-RELATED 39 545 IPR028307 -
Seca3g00658 631 MobiDBLite consensus disorder prediction 78 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00658 Seca-Chr3 10319605 10325338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00658 13 565 CPP Transcription Factor Family AT4G29000 41.885 3.00e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca3g00658 TCR 3.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00658 - K21776 gmx:100811459 845.884