Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00652 ATGTGTATAGAAATTGTAAGGCAATTGGTTTGTAATAGAGAGGGAGAGAGGAGTGAGAAGCATCTTAATAGGACTGATAAAATTAGGGAGGCAAAGGCCCTCACCCGAACTGAGTGTAAAGCAAGGCTCCGTGTTTCCTTAGATTATAGAAGTAGAAAGTGGAGGGTTGGAATCTTTGAGCCAGCTCATAACCATGAATTGACTCCTGCAAGTATGATACATTTTCTACCTGCTTATCGTGGGTTGAGTGTAGCGGATAAGGCACAAGTTGACGGTCTACATCATTACGGTGTCAGGACTTGTCATATAATGAGTCTTATAATGGGTCAAAAGGGAGGTTATTCTGATCTTGGTTTTTGTAAGAAGGATTTGTACAATCATATTGATAAAGAGAATCGGGCAAAAATAGAGGATGGGGATGCATTTGCTGCGTTGTGCTACCTTCAATCTAAGTTTGACAACAATCCAATGACATTTATAAAGTTTACAACCACTGAAGATCACAAACTTGAAAACCTGTTTTGGTCAGATGTAGGAAGTAGAATTGATTATATTTGTTTTGGTGATGTAGTTGCTTTTGACACAACATACAAGAAAATGTTCAATAAAGTTTCTAAGGTTGTGGTTACTGATGGAGATGGTGCAATGCGTGAAGCTATCAGGTCTGTTTTTCCAGGTGCTCTTCACAGGTTGTGTGGATGGCACCTTCACCAAAATGCTTGTGAGAATGTTAAGAATCCCAAATTCCTTGAAGATTTTAAGACCCTAATTTATGGAAATTTTATTCGTCAGAAATTTGAGGATGAGTGGAACAAGGTTGTTGACAAACATGGTGTGAGGGAAAATAGGTGGGTCAGAAAAGTATATGACATGAAGAGGATGTGGGCCACGACATATCTGAGGGATAATTTTTTTGGGGGTATCAGGACAACTTCTATATGTGAAGGGATTAACTATGTTCAGAGCAAAAATAGCCTTGTTGATTTTCTTCACAATTTTGAGAGAGCTCTCAATGAATATAGACACAACGAGTTAACTTCAGATTTCAAGTCGAAATACACTCAACCTGTGATGACTATTGCTTTGGAAAGATATGAAGTTCAAGCTTCAAATGTCTACACGAGGAATAAGTTTTTTGATGTTCGAAAGCAAATTGAGAAAGTTGCTGCCATAAATGTCATTGAGAGGATAGATGTTGGTAATGGCATTACAATGAAGATGAATAAATTTGGCACTCCTGATTCTTCTTATATTGTTACGTTGGATAAGTCTGATGGTAATTTCGTTTGTGATTGTCGCATGTTTGAATCATGTAGTCTCCCTTGTTCACACATTTTCAGTGCTATGAAGCATGAGCAAGTGGAATCCATTCCTTCATCTTTGATTTTGAAAAGATGGACTAAGTTGGCTAAAGTTGAGCACATTTCTTTTGTTTATGCTGAAGAAGGTGACACATCAAAGAAAGTTTTATTGAGGTCTGGTGCTGTTGGTGCTGCATGTAACAGGCTTAACAAGGCTGCACGTAGAAATCCTCACAATTTTGTAAAGAACATTGAATCTATTCATAAGTTAGCAGAACAGATGGAAAGGCAGGAAGGTATTGACTTGAACATTGCTGATATATCAAGAGTTGTTCGTGACCCAATTGTTGTTAAAACTAAAGGTTCCCCTCGAAAGAATAAGAAAATGATCAAAAAAAGGAAATGTTCTTACTGTAAACGTCCAGGGCACACAGTTAGGACATGCACTAAATATGCTACTCATGATCAGTTGGATACAGTTATTGAAGAGGAATCATCTGTTGAGACTGATGAAGATTCAAGAGATGAAAGTGTAATGTTACTGTTGACATTGTTTTTTTACATATTTAAAAAATATTTATTAGTAAACATTTATTCTGTTGTTTATTTTAGTCATCACTGA 1923 0.3687 MCIEIVRQLVCNREGERSEKHLNRTDKIREAKALTRTECKARLRVSLDYRSRKWRVGIFEPAHNHELTPASMIHFLPAYRGLSVADKAQVDGLHHYGVRTCHIMSLIMGQKGGYSDLGFCKKDLYNHIDKENRAKIEDGDAFAALCYLQSKFDNNPMTFIKFTTTEDHKLENLFWSDVGSRIDYICFGDVVAFDTTYKKMFNKVSKVVVTDGDGAMREAIRSVFPGALHRLCGWHLHQNACENVKNPKFLEDFKTLIYGNFIRQKFEDEWNKVVDKHGVRENRWVRKVYDMKRMWATTYLRDNFFGGIRTTSICEGINYVQSKNSLVDFLHNFERALNEYRHNELTSDFKSKYTQPVMTIALERYEVQASNVYTRNKFFDVRKQIEKVAAINVIERIDVGNGITMKMNKFGTPDSSYIVTLDKSDGNFVCDCRMFESCSLPCSHIFSAMKHEQVESIPSSLILKRWTKLAKVEHISFVYAEEGDTSKKVLLRSGAVGAACNRLNKAARRNPHNFVKNIESIHKLAEQMERQEGIDLNIADISRVVRDPIVVKTKGSPRKNKKMIKKRKCSYCKRPGHTVRTCTKYATHDQLDTVIEEESSVETDEDSRDESVMLLLTLFFYIFKKYLLVNIYSVVYFSHH. 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00652 640 SUPERFAMILY Retrovirus zinc finger-like domains 555 587 IPR036875 GO:0003676|GO:0008270
Seca3g00652 640 SMART 26again6 428 455 IPR006564 GO:0008270
Seca3g00652 640 Pfam MULE transposase domain 193 239 IPR018289 -
Seca3g00652 640 Pfam FAR1 DNA-binding domain 6 68 IPR004330 -
Seca3g00652 640 PANTHER OS01G0519700 PROTEIN 195 583 - -
Seca3g00652 640 ProSiteProfiles Zinc finger SWIM-type profile. 417 453 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00652 Seca-Chr3 10252067 10254124 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g00652 FAR1 6.1e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00652 - - tpra:123910662 620.157