Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00644 AGGACTACTGGCCCTACAAGGCGCTCTACCAAAGGACAATGGACACCTGAGGAGGATGAGATTTTGCGGAAGGCTGTTCAGCGTTTCAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGACAGAACTGATGTGCAATGCCTGCATAGGTGGCAGAAGGTCTTAAACCCGGAACTTGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATTGATTTGGTGAACAAATATGGGCCAAAAAAGTGGTCTACTATAGCACAACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCACAATCATCTTAATCCTTCTATAAACAAGGAAGCATGGACGCAGGAAGAGGAGGTGGCTCTAATCCGTGCTCATCAGATTTATGGGAACAGATGGGCAGAATTGACGAAGTTCTTGCCTGGAAGGACAGACAATGCTATAAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTACTTGGCATCGGGCTTGCTTGCTCAGTTACAAGCTGTACCACTTGTTGGAAATCCGAATCAACCTATTGCTTCAACCTCTTCAAGGTTGCAGCGCAGTGAAGATGATAATGGTCCTAGGGGGACCGAAGGAGAGGAAGTTTCACAGTGTAGCCAGGAGTCAGCTAATGCTGGTCACTTTTCGTCTGTCAGAGAGATGAGCAATGCTGTTTTACAAACCAGAGAGGAATACAGACCAAATGAAGAATCTAATACAGTCAAGGAATATAATCCTAGTCAAGTATCCTGTTCTGAGCCATATTACGTGAGTCTGGATGAGGTTTACCCTTCTCGATTGATTGAGCAGAACTACACACATGAACCTAGAAATTCTACAAACGGGGATTGCCAAGTTAATTTACATGATTTACCCGATATTTCGTCACTGGAATTTGCGCAGGAATCATCACAATTGCAAAATGATTGTATAGTTCCCAGGGAAAGTCATGACATGGTGAATGTTCCATTTCAGTCTTCAGTGGGGTTGAGTGTTGCTACGTCCATGGGACCTACATCTATGGACTCTGTTAAACCAGAGCACATGTTGATATCTGATGATGAATGTTGCAGAATCCTATTTTCAGAGGCAATGGGTGATGAATGCTTTTCCTCTGGAGATTATAGGGTTGACATGTCTGGATGCACTTCATTTCTTTGTCAGTCATCTTTACCATCTGATCAATCAGTACCTTCTTCTACTGGTGATAGGTTGCTGTATACTGCCGAAGCCAATCAGTTGGTTGGGTCTGAGGATCAGCAGTTGGTCTCCAGAGCACATGATAACTTAATTTATGCCAATGACTCGTCCAGTTCTCCATGCATTGATAGGATAGATAGTGCAGCAACGCAAGAGCCACCTGATACTTCAAATGTGGTCCCTGTAAATACTACACAAACTTGCAATCCAATGGATGAAAAGCCAAATGCGGATACAGAACAGGACACAGGAGCTCTATGTTACGAACCACCCCGTTTCCCAAGCTTGGATATTCCTTTCTTAAGCTGTGACCTTATACAATCCGGGGGTGATATGCAACAAGAATTTAGTCCCTTGGGAATCCGCCAATTTATGATGTCTTCTATGAACTGTCTAACTCCCTTCAGATTGTGGGATTCGCCTTCTCGGGATGATAGTCCAGATGCTTTGTTGAAAAGTGCTGCTAAAACTTTCACAGCTACACCATCCATATTAAAGAAACGACACCGAGACCTTTTATCTCCATTATCTGATAAAAGAATCGACAAGAAACTTGAGATTGACATGACATCAACCTTGATTAAAAACTTTTCCCGTTTGGATGTCATGTTTGAAGACAATGAGACTCGGGGAGCAGATTTGCTCTCTCCAGCTTCAATGCAAAAAAGAAACTCTGGTTCGTCTCTCGAAGATGATAAAGAAAATTGTGGACAAGCTTTTAAATTGGAACAAGTAGAGGAGAAAAATAAATCTGCAATATTGAACGACAAAAAGTCAGAAAAAGATGCTGGTGAAAGTAATTCTCAGGATATAATTAAGCCGCAACCTCTTGATGTTGATTCTAAGACGAAGAATGATGTTAATGCTGCAGCTGACATTGTGCGACAACCTTTGGGAGTTTTGTTTGAACATGATATGAATGAAATGTTACTGTATTCTCCTAATCAAGTTGGTTTATCAGACAGAGTTCTAAGTTTAAGTGCCAGAAGTAATAAAAATCCATGCTCAAGGATTAACTCTCCTTCTGTTCGAGCAACGGAGCATGACATACTTTCAGTTAATACAGGAAACGATGTTGGTTTTGAAGCATGTAGCATATTTGGCGGAACACCTTTTAGGAAAAGCATTGAATCACCTTCAGCATGGAAATCTCCTTGGTTTATCAACGCTTTCATGTCTAGCCCCAGGACTGAAATTACAATTGAGGATTTTGGGTATTTCATGAGCCCAGGTGATAAAAGTTACGATGCAATCGGATTGATGAAACAGATCAGCGAACAAACCGCTGCTCAATATGCCAATGCTCATGAGATTTTGGAAAATGAAACTCCTAAGGCGTTACCAAAAGATGCATCTGGAAACGATAGGAATGGCGATCAGGAAAATAACGAACCTCATAATCAGCATGGGAACCATTCTCAGTTGGCTTCAAATGCTCTGGTGGAGCGACGCATACTTGACTTCAGCGAATGTGGAACTCCGGCCAAGGCTGATAATAGCAAATCCTCAGCTATGAGCTGCTCTAGTCCTTCATATTTGTTGAAGGGTTGTAGATAG 2790 0.4168 RTTGPTRRSTKGQWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEEVALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLAQLQAVPLVGNPNQPIASTSSRLQRSEDDNGPRGTEGEEVSQCSQESANAGHFSSVREMSNAVLQTREEYRPNEESNTVKEYNPSQVSCSEPYYVSLDEVYPSRLIEQNYTHEPRNSTNGDCQVNLHDLPDISSLEFAQESSQLQNDCIVPRESHDMVNVPFQSSVGLSVATSMGPTSMDSVKPEHMLISDDECCRILFSEAMGDECFSSGDYRVDMSGCTSFLCQSSLPSDQSVPSSTGDRLLYTAEANQLVGSEDQQLVSRAHDNLIYANDSSSSPCIDRIDSAATQEPPDTSNVVPVNTTQTCNPMDEKPNADTEQDTGALCYEPPRFPSLDIPFLSCDLIQSGGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFTATPSILKKRHRDLLSPLSDKRIDKKLEIDMTSTLIKNFSRLDVMFEDNETRGADLLSPASMQKRNSGSSLEDDKENCGQAFKLEQVEEKNKSAILNDKKSEKDAGESNSQDIIKPQPLDVDSKTKNDVNAAADIVRQPLGVLFEHDMNEMLLYSPNQVGLSDRVLSLSARSNKNPCSRINSPSVRATEHDILSVNTGNDVGFEACSIFGGTPFRKSIESPSAWKSPWFINAFMSSPRTEITIEDFGYFMSPGDKSYDAIGLMKQISEQTAAQYANAHEILENETPKALPKDASGNDRNGDQENNEPHNQHGNHSQLASNALVERRILDFSECGTPAKADNSKSSAMSCSSPSYLLKGCR. 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00644 929 Coils Coil 833 853 - -
Seca3g00644 929 Gene3D - 116 175 - -
Seca3g00644 929 CDD SANT 117 157 IPR001005 -
Seca3g00644 929 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 113 IPR017930 -
Seca3g00644 929 SUPERFAMILY Homeodomain-like 60 156 IPR009057 -
Seca3g00644 929 Gene3D - 63 114 - -
Seca3g00644 929 CDD SANT 65 109 IPR001005 -
Seca3g00644 929 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 57 IPR017930 -
Seca3g00644 929 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Seca3g00644 929 Pfam Myb-like DNA-binding domain 115 157 IPR001005 -
Seca3g00644 929 Pfam Myb-like DNA-binding domain 63 109 IPR001005 -
Seca3g00644 929 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Seca3g00644 929 CDD SANT 14 57 IPR001005 -
Seca3g00644 929 MobiDBLite consensus disorder prediction 863 877 - -
Seca3g00644 929 MobiDBLite consensus disorder prediction 183 229 - -
Seca3g00644 929 FunFam Transcription factor MYB3R-2 116 178 - -
Seca3g00644 929 ProSiteProfiles Myb-like domain profile. 110 160 IPR001005 -
Seca3g00644 929 FunFam Transcriptional activator Myb isoform A 63 115 - -
Seca3g00644 929 ProSiteProfiles Myb-like domain profile. 58 109 IPR001005 -
Seca3g00644 929 SUPERFAMILY Homeodomain-like 7 63 IPR009057 -
Seca3g00644 929 MobiDBLite consensus disorder prediction 210 229 - -
Seca3g00644 929 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 164 IPR017930 -
Seca3g00644 929 PANTHER MYB PROTEIN-RELATED 11 96 - -
Seca3g00644 929 SMART sant 10 59 IPR001005 -
Seca3g00644 929 SMART sant 62 111 IPR001005 -
Seca3g00644 929 SMART sant 114 162 IPR001005 -
Seca3g00644 929 MobiDBLite consensus disorder prediction 183 198 - -
Seca3g00644 929 MobiDBLite consensus disorder prediction 662 678 - -
Seca3g00644 929 MobiDBLite consensus disorder prediction 850 885 - -
Seca3g00644 929 MobiDBLite consensus disorder prediction 662 693 - -
Seca3g00644 929 FunFam Transcriptional activator Myb isoform A 10 62 - -
Seca3g00644 929 Gene3D - 10 62 - -
Seca3g00644 929 MobiDBLite consensus disorder prediction 906 921 - -
Seca3g00644 929 MobiDBLite consensus disorder prediction 903 929 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00644 Seca-Chr3 10167321 10172044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00644 1 929 MYB Transcription Factor Family AT4G32730 43.984 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g00644 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00644 - K09420 gmx:100811335 1473.76