LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g00638	ATGTTTTCACCATTTTCGCCGGCGATTTCTCCGGCAACCAAGCCACCACAGCCAGCATTTGACACTGCTGCTCCGCCATTGCCGGGACCAGTATCACCTCCATTCGACTTTCCGCCGCCTCCACCACTGTCTCCGGCGCCTTCAGCACCTCCGGTTACCTCGCCGGTGACTACAGCCCCGCCGACGCCTTCTTCAACGGTACCACTGCCTACAAACTCTGCACCTCCGGTTACCTCGCCAGCGACTCCATCTCCGCCGACGGTGTCTTCAACGGCGCCACTGCCTGCAAACTCTGTACCTCCGGTTACTTCGACGGTGCCGCTGCCTACAAATTCTCCACCTCCGGTTGCATCCCCGGATATTCCTGCTCCGCCGGTGTTGCCCTCACCGTCACCAGAAAGTTCGCACGTTCCAGCTTCTTCTTCGCCTCCGAATACATCGAATGAGATTCCAGATTCGTCAACACCGTCTCCTCCAGTTATGTCACTTCCTCCGGTGATGCCGTTGCCATCTCCGTTGCCGCCGGCATCTCAAACACCACCGTTTCCGCCATCAACAGTTGCGGCAACGCCTCCAACGGTCACTTTTTCACCACCTTCAACACCTACATTGCCAGAGGTAATGCCTCAGCCACCGCCTTTGCCTATTCCATTCACGGAACCTCCTTTGTCATCACGGCCAACACCGGTGTCTTCACCGGAAGTGAATTTGCGGCCAACATCATCAAGTAGAAGTTTGCCGGTAGCTGTGGAAGTTCAGAAGCCTTCAGGCTTCAATGTGTCAAGTGGACTCATCGTTGGAGTTATTATTGGAGCTATCTTTTTTGTTTTTGTTCTTGCCATTGTATCAGTTCTATGCAGAAATAGGAAGAAGAAGAAGCAGAAGAATCGGTCCTTACATCACCAAAAGGAATCATCATTACCCTGTGTTGGATCAAAAGGGTCTCATGTAATTCGAGTGCCATCAAATCCAACTCTGCCACCACATCTCACTGAGGACGGTGGTCTCGGTGGAGCTTCTGATTCTGTTAATTCTGGGTCTGTGAGACTAATTCCAAATCACGCTCCAAGCATTGGCTTTGGTCCTGTGAATGGTATTTTCGCATATGAGGAACTAGAGGTAGCCACTAAGTATTTCGCTGAGTCCAACCTTCTTGGAGAAGGTGGTTTTGGGTATGTATACAAAGGAGTTCTCCCCTGTGGAAAGGAAATTGCAGTTAAACAGTTAAAAGCAGGAAGCCAGCAAGGAGAGCGAGAATTTCAAGCTGAGGTTGAGACCATTAGCCGGGTGCACCATAAACATCTTGTTGAATTGGTTGGATACTGCATTAACAGGGCAGAAAGATTGCTTGTCTACGAATTTGTTCCAAATAACACATTGGAATTCCACTTACATGGGGAGGGGAAAACAGTCATGGAATGGGCAACCAGAGTTAAAATTGCATTGGGATCTGCAAAAGGGCTGGCATATCTACATGAAGATTGTAATCCAGCAATCATTCACCGAGATATAAAAACATCTAATATTCTTCTTGATTTCAAGTTTGAAGCAAAGGTTTCTGACTTTGGGCTGGCAAAAATCTTCCCCAACACCGATAGTTGCATTACTCACCTCACCACCCGGGTGGTGGGAACCTTTGGTAAATAA	1647	0.4912	MFSPFSPAISPATKPPQPAFDTAAPPLPGPVSPPFDFPPPPPLSPAPSAPPVTSPVTTAPPTPSSTVPLPTNSAPPVTSPATPSPPTVSSTAPLPANSVPPVTSTVPLPTNSPPPVASPDIPAPPVLPSPSPESSHVPASSSPPNTSNEIPDSSTPSPPVMSLPPVMPLPSPLPPASQTPPFPPSTVAATPPTVTFSPPSTPTLPEVMPQPPPLPIPFTEPPLSSRPTPVSSPEVNLRPTSSSRSLPVAVEVQKPSGFNVSSGLIVGVIIGAIFFVFVLAIVSVLCRNRKKKKQKNRSLHHQKESSLPCVGSKGSHVIRVPSNPTLPPHLTEDGGLGGASDSVNSGSVRLIPNHAPSIGFGPVNGIFAYEELEVATKYFAESNLLGEGGFGYVYKGVLPCGKEIAVKQLKAGSQQGEREFQAEVETISRVHHKHLVELVGYCINRAERLLVYEFVPNNTLEFHLHGEGKTVMEWATRVKIALGSAKGLAYLHEDCNPAIIHRDIKTSNILLDFKFEAKVSDFGLAKIFPNTDSCITHLTTRVVGTFGK.	549

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g00638	548	MobiDBLite	consensus disorder prediction	100	132	-	-
	Seca3g00638	548	MobiDBLite	consensus disorder prediction	195	228	-	-
	Seca3g00638	548	MobiDBLite	consensus disorder prediction	9	90	-	-
	Seca3g00638	548	ProSitePatterns	Protein kinases ATP-binding region signature.	385	407	IPR017441	GO:0005524
	Seca3g00638	548	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	273	547	IPR047117	-
	Seca3g00638	548	MobiDBLite	consensus disorder prediction	1	242	-	-
	Seca3g00638	548	FunFam	Protein kinase superfamily protein	455	527	-	-
	Seca3g00638	548	Gene3D	Phosphorylase Kinase; domain 1	358	454	-	-
	Seca3g00638	548	Gene3D	Transferase(Phosphotransferase) domain 1	455	547	-	-
	Seca3g00638	548	MobiDBLite	consensus disorder prediction	157	188	-	-
	Seca3g00638	548	FunFam	Proline-rich receptor-like protein kinase PERK8	352	454	-	-
	Seca3g00638	548	MobiDBLite	consensus disorder prediction	292	313	-	-
	Seca3g00638	548	ProSiteProfiles	Protein kinase domain profile.	379	548	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g00638	548	Pfam	Protein kinase domain	381	545	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g00638	548	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	499	511	IPR008271	GO:0004672\|GO:0006468
	Seca3g00638	548	MobiDBLite	consensus disorder prediction	133	156	-	-
	Seca3g00638	548	SUPERFAMILY	Protein kinase-like (PK-like)	361	546	IPR011009	-
	Seca3g00638	548	SMART	serkin_6	379	546	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g00638	Seca-Chr3	9988005	9992969	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g00638	143	547	Trihelix Transcription Factor Family	AT4G32710	46.394	2.74e-88	286

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Seca3g00638		Pkinase	1.7e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g00638	-		-	gmx:100810262	470.314