Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00622 ATGACCATGATGAATTCAGGGTCGCTTGATTACTGGAGGAATTACTTTAGAGGTGCTAACGCTGATATCTTTGGTATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGTTCCAAGGAGTTCAAGTTAAGGAGGGGTTCGATTGCAGAACGGTTGTTCTCTTGCAGGTTGACTCGCTATTCAGGGTGTGACAGAGTTGAGTTGGCTGTGTCTGCGGATGATGGTGGTGGTTGCAATTGCAAGAGCGGCTCTGATGGAAATGGTACTAAGCTTGAGTTTGAAGCGGGGGCAAGTAAAGAGAGCAAGGTCAATAGTTGCAGAGATGATCATGGAGAGATGAATATGAACCAAGTCAGCAATTACAGCTTTGAGGAGGCTGAGGCATTGATTGATGAGATTGAAGAAGAGTCTCAGTATTTTGAGGAGGTGTTGAGGATCAGAGATATTGTGCTTAACTTTAAAGAAGAGTCTAATTCAGTGTTATTTGAGTCATTGAGGAGGCTTCAACTGATGGAACTCACTATGGATCTCCTGAAGGCAACCGAGATTGGAAAAACTGTTAATCCTCTTCGAAAGCATGGATCAAAGAATATTTCTCAACTTGCACGGACTCTTATCAATGTCTGGAAAGGAATGGTGGATGAGTGGGTCAAGGCTACCACACCTATTGCAGTATATATAGGTTCAGAAGGCACTCCAGATTCAGTAAATCCATCTGTTGTTGATGAAGAAGAGGGACTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCAATTGCAACTCAAACTGGTTCAATGGATCTCTCGCAGTTCTTTGATGGCATGGATGATGATGGAAGTGAGTTCACTATGGAATTTCTTATGCTTAGTCTTGCTATCTTTTGCTCTTTGGTTCTCTATTTGAATTCCCCACTTCTCAGTTTGATGGTTGTGAACGGGGAATTCTGTTTTAGATCCTCAACAAAGTGGGGAATTCATCAAGAACCAAGATGA 999 0.4274 MTMMNSGSLDYWRNYFRGANADIFGIIDHAIMVAASDCSKEFKLRRGSIAERLFSCRLTRYSGCDRVELAVSADDGGGCNCKSGSDGNGTKLEFEAGASKESKVNSCRDDHGEMNMNQVSNYSFEEAEALIDEIEEESQYFEEVLRIRDIVLNFKEESNSVLFESLRRLQLMELTMDLLKATEIGKTVNPLRKHGSKNISQLARTLINVWKGMVDEWVKATTPIAVYIGSEGTPDSVNPSVVDEEEGLPSPPMDEGALFAIATQTGSMDLSQFFDGMDDDGSEFTMEFLMLSLAIFCSLVLYLNSPLLSLMVVNGEFCFRSSTKWGIHQEPR. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00622 332 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 281 IPR044805 -
Seca3g00622 332 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 224 IPR035441 -
Seca3g00622 332 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Seca3g00622 332 CDD TFIIS_I 142 215 - -
Seca3g00622 332 Coils Coil 124 144 - -
Seca3g00622 332 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
Seca3g00622 332 SMART TFS2_5 141 216 IPR003617 GO:0005634
Seca3g00622 332 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 140 222 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00622 Seca-Chr3 9603002 9605350 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca3g00622 Med26 5.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00622 - - gmx:100775579 421.394