Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00621 ATGGTATCTGTCCAAACAAATCATATGGAAAGGGAACGAACCCGGAAACGGCCTCGTCTCGCGTGGGATGTAGCTCCTCCCTCAGAGCATGAGGCGCAAAGGGCTCTGGTAGTGGTGGGTGACGGAGGAATCGTAAGAAAGCATGTATCTCCTCCAAGAAGGGACGACGATCGCGATGGCCATTATGTCTTCAATCTCGGCGAAAATCTCACTCCTAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACCTTTGGTCGAGTTTTGGAATGTTGGGATCGCCAAACTAGAGAGTATGTGGCTATCAAGGTAATTAGAAGCATACAGAAATATCGAGATGCAGCGATGCTTGAGGTTGAAGTGCTTCAATGTCTAGCGAAGAATGATCGAGGAAGCTCACGCTGTGTGCAGATCCGAAATTGGTTTGATTACAGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATGTCTGTGGATTATTCTTGACCTTCTGTTTATTTCTCATGTCTTATTCTCATATCTCTTGCTTACAGACCAACCACATCATTTTCCTTGGCTTGCTTTGTTAGTCCAGGGTTGCTTTGTATCTTTGTTGTGTCTGCTTATTTTAACTTGTTTCTTGTGCTTTATCATATTCAGATATGCATGA 747 0.4311 MVSVQTNHMERERTRKRPRLAWDVAPPSEHEAQRALVVVGDGGIVRKHVSPPRRDDDRDGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKVIRSIQKYRDAAMLEVEVLQCLAKNDRGSSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVACLWIILDLLFISHVLFSYLLLTDQPHHFPWLALLVQGCFVSLLCLLILTCFLCFIIFRYA. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00621 248 FunFam Serine/threonine-protein kinase AFC2 61 154 - -
Seca3g00621 248 SUPERFAMILY Protein kinase-like (PK-like) 61 190 IPR011009 -
Seca3g00621 248 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 21 189 - -
Seca3g00621 248 SMART serkin_6 74 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00621 248 Gene3D Phosphorylase Kinase; domain 1 61 154 - -
Seca3g00621 248 Gene3D Transferase(Phosphotransferase) domain 1 128 190 - -
Seca3g00621 248 ProSiteProfiles Protein kinase domain profile. 74 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00621 248 Pfam Protein kinase domain 74 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00621 Seca-Chr3 9581438 9583383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00621 58 179 EF-hand Containing Proteins AT5G22840 33.594 3.70e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Seca3g00621 Pkinase 3.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00621 K08287 - gmx:100782453 352.058