Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00620 ATGGTTCGATTGGTACAGAGGGTTTCCTCAGGTGAAACGCAATTCAGGTGCTTGCCCAAGTCAAGTGCTATTAAGCTGATTGATTTTGGCAGTACTGCATTTGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATTTTAGGACTAGGGTGGTCATACCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATTGAACTATGCACGGGTGAAGCTTTGTTTCAGACTCATGAAAACTTAGAGCACCTGGCAATGATGGAGAGAGTCTTGGGACCTCTACCAGAGCACATGGTTCGAAGATCTAACAAGGGCGCAGAAAAGTATTTCAAGCGTGGATCACGATTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATAAATGCAGTGAAGAAGCTTGGTCATCTTAAGGATATTGTATCACGTTATGCAGAGTCCTCAAGGGCCTCATTAACTGACTTGTTACATGGCTTATTAACATATGATCCGTCTGAACGTCTAACTGCTCGTGAAGCCCTTGATCATCCCTTCTTTAGGGATCCAACTTAA 573 0.4363 MVRLVQRVSSGETQFRCLPKSSAIKLIDFGSTAFDNQNHSSIVSTRHYRAPEVILGLGWSYPCDLWSVGCILIELCTGEALFQTHENLEHLAMMERVLGPLPEHMVRRSNKGAEKYFKRGSRLRWPEGAVSRESINAVKKLGHLKDIVSRYAESSRASLTDLLHGLLTYDPSERLTAREALDHPFFRDPT. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00620 190 SMART serkin_6 2 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00620 190 SUPERFAMILY Protein kinase-like (PK-like) 21 188 IPR011009 -
Seca3g00620 190 Gene3D Transferase(Phosphotransferase) domain 1 19 186 - -
Seca3g00620 190 Pfam Protein kinase domain 21 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00620 190 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 8 188 - -
Seca3g00620 190 ProSiteProfiles Protein kinase domain profile. 1 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00620 Seca-Chr3 9579701 9581282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00620 25 186 EF-hand Containing Proteins AT5G22840 31.429 1.61e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Seca3g00620 Pkinase 1.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00620 K08287 - gmx:100782453 347.821