Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00613 ATGGAAGAAGGAAGTAGTGGTGGAAAGGAAGAAACCCTACCACCAGGATTTCGATTTCATCCTACAGACGAAGAACTCATCACTTGCTATCTCATAAATAAGATATCAGATTCTACTTTTACAGGCAAAGCCATCACTGAAGTTGATCTCAACAAATCTGAACCATGGGAACTCCCAGGGAAGGCAAAGATGGGAGAAAAGGAATGGTACTTCTTCAATCTGAGAGATCGTAAATACCCCACAGGTGTGAGAACCAATCGAGCAACCAACACAGGATATTGGAAGACCACAGGGAAAGATAAAGAGATCCACAACAGTGTTACATCAGAGTTGGTTGGCATGAAGAAGACTTTGGTATTCTATAAAGGCAGAGCTCCCAGAGGAGAGAAAAGTAACTGGGTCATGCATGAATACCGTATTCACTCAAAATCCACTTTCAGATCAACCAACAAGCAGGATGAATGGGTGGTTTGCCGGGTGTTCCAGAAGAGTGGTGGTGCAAAAAAGTACCCTTCTTCTAATCAAACAAGAACAGTGAATCCTTATAGCTTGGAAATAGGTCCTAATTTTGTGCCACCATCAATGATGCAATTGGGAGATCCTGCTGCTCATCATTTCCTTTATGGAAGGAATTACATAAACAATTTAGAGTTTGCTGAAATTGCTAGGGTTTTGAGAGGGGGTGGGTCAACCAGTAGTAGTGTCAATTTAGCAATGCAATCCCAATTGAACTACCCTGTATCAGCAGCAGGGGGAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGATCAGGAGCAACAGCAGTCACAACACAACCAATTTCAAGGCCAATTTTGGAACCTTCTCAGACAATGGGTCAAGTACATGATATTGTCAGTTCCAACATGATGATGACATTGACACCTGGTTCTGTTGGAGCAGAGAATGTAGGTTATGGTACATCAGAAATTAACAACACAAATCCTCATCATGGTAATAGGTTTATGGGGATGGAACATTGCATGGATCTAGACAATTACTGGCCTTCCTACTAA 1038 0.4191 MEEGSSGGKEETLPPGFRFHPTDEELITCYLINKISDSTFTGKAITEVDLNKSEPWELPGKAKMGEKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEIHNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRSTNKQDEWVVCRVFQKSGGAKKYPSSNQTRTVNPYSLEIGPNFVPPSMMQLGDPAAHHFLYGRNYINNLEFAEIARVLRGGGSTSSSVNLAMQSQLNYPVSAAGGGFTISGLNLNLGSGATAVTTQPISRPILEPSQTMGQVHDIVSSNMMMTLTPGSVGAENVGYGTSEINNTNPHHGNRFMGMEHCMDLDNYWPSY. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00613 345 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
Seca3g00613 345 FunFam NAC domain-containing protein 100-like 22 167 - -
Seca3g00613 345 ProSiteProfiles NAC domain profile. 13 163 IPR003441 GO:0003677|GO:0006355
Seca3g00613 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 225 - -
Seca3g00613 345 Gene3D NAC domain 22 166 IPR036093 GO:0003677|GO:0006355
Seca3g00613 345 Pfam No apical meristem (NAM) protein 14 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00613 Seca-Chr3 9536569 9539522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00613 1 345 NAC Transcription Factor Family AT2G24430 50.136 6.85e-109 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g00613 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00613 - - gmx:100804931 530.02