Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00591 ATGTCTCATAAAACACAATACTGCTGTCTTATTGTGCTCTTCATGTTGGGCACTTGTTTTGTGCCATCACTTAGTGACACAAATGCTCAAGTTCTAATGAACTTCAAAGGCTTCTTATCCAATGCTGATGCTTTAAATAACTGGGGGAATGAGTCAATAGGTGTGTGCAGGTGGACTGGTATATTATGCTTCAATCAGACATTTCATGGTTTGAGACTAGAGAATATGGAACTAAGTGGAACCATTAATGTTGACATCTTGTTGGAATTGTCCAATTTGAACAGCTTTAGTGTCATTAACAATAACTTTGAGGGTCCAATTCCTGCATTCAAGAAGCTTGGGAGTTTAAGGGGATTGTTTCTGAGTAATAACAAATTCTCTGGTGAAATTCCTGATGATGCTTTTGAAGGTATGAGAAGGCTGAAGAGAGTTTTCTTGGCAGAAAATGGGTTCAGTGGTCATATTCCTACATCCCTTGCTCAATTGCCTAGACTTTTGGATGTAGACTTACATGGAAATAGTTTTGAAGGTAACATACCAGAATTTCAACAGAGAGATTTCAGAGTGTTCAATTTATCTAACAACCAATTAGAGGGTCCAATACCAGAAAGCTTAAGCAATGAGGATCCAGGCTTATTTGCAGGGAACAAAGGTCTATGCGGAAAACCTCGTCGTCCACATGAAGAAAATGAACATAAGAAAAATAGAAACCTTATTACTATTATTGTAGCGGTGGTTGTGGTTGTCTTGGCCTTAATCCTAGCACTTCTCTTCATCCGTTCCTGTAGAAGAAAAACTACACAAACCATTTTGGTTAATGAGGATGCACAAAACACTAGTGCAGTTATTTCCAGTGAGGCCAAATCCATTGATGTGGCAGGTGCATCCATCAAGAAGGGTAATGTAGATGGAGATTTGAACTTTGTTAGGAATAATGAAAAGGTGATGTTTGATTTGCAAGACTTGCTTAGGGCCTCAGCTGAGGTTTTGGGAAGTGGTAGTTTTGGATCCACATACAAGGCTATGCTTTTGAATGGACCAGTTGTGGTCGTTAAGAGGTTTAAGCACATGAACAATTCAGGGAAAAAAGAGTTCTTTGAGCACATGAAAAGGCTTGGAAGATTGTCACATCCTAATGTACTCCCTCTTGTTGCATTCTATTATGGAAAAGAAGAGAAGCTTTTGGTTCATGAATTCGTTGAAAATGGCAGCTTGGCTAGTCATCTTCATGGTAGACGTGGTCCAGAGTTGGATTGGCCAATTCGTTTGAAGATCATAAAAGGGGTGGCTAGGGGATTAGCTTACCTTTACAAAGAATTCCCTGATCAAAACATACCACATGGCCATCTTAAATCCTCCAATGTTTTGCTAAACCATTCATTTGAGCCTCTTTTGGCAGAGTATGGACTTGCTGTAGTGATGGAGAAGAGGCATGCTCATCAGTTTATGGCAGCATACAAGTCCCCAGAGGTGAGCCAGTATGAGAAGCCTAGTGAGAAGAGTGATGTTTGGTGCTTAGGGATTCTCATATTGGAGATATTGACAGGGAAGTTTCCATCAAATTATCTAAGACATGGGAAGGAAGCAAGTGAGGAATTGGCAATGTGGGTGGACTCAATTGTGAGGGAAGGGTGGAGTGGGGAGGTGTTGGATAAGAGCATTTCAGGGAGAAGGAATGGGGAGGGTGAGATGTTGAAGCTGTTGAGGATTGGGATGGGTTGCTGTGAATGGGGTTTGGAGAATAGGTGGGATTGGAAGGAGGCTGTGGCCAAGATTGAGGAGTTGAAGGAGAGAGATTTTGAAGATGAAAGTGACTCATCCTCTTTGAATCAACATGATGATGACTTGTCTTTCTCCCTCACTACTTGA 1869 0.4109 MSHKTQYCCLIVLFMLGTCFVPSLSDTNAQVLMNFKGFLSNADALNNWGNESIGVCRWTGILCFNQTFHGLRLENMELSGTINVDILLELSNLNSFSVINNNFEGPIPAFKKLGSLRGLFLSNNKFSGEIPDDAFEGMRRLKRVFLAENGFSGHIPTSLAQLPRLLDVDLHGNSFEGNIPEFQQRDFRVFNLSNNQLEGPIPESLSNEDPGLFAGNKGLCGKPRRPHEENEHKKNRNLITIIVAVVVVVLALILALLFIRSCRRKTTQTILVNEDAQNTSAVISSEAKSIDVAGASIKKGNVDGDLNFVRNNEKVMFDLQDLLRASAEVLGSGSFGSTYKAMLLNGPVVVVKRFKHMNNSGKKEFFEHMKRLGRLSHPNVLPLVAFYYGKEEKLLVHEFVENGSLASHLHGRRGPELDWPIRLKIIKGVARGLAYLYKEFPDQNIPHGHLKSSNVLLNHSFEPLLAEYGLAVVMEKRHAHQFMAAYKSPEVSQYEKPSEKSDVWCLGILILEILTGKFPSNYLRHGKEASEELAMWVDSIVREGWSGEVLDKSISGRRNGEGEMLKLLRIGMGCCEWGLENRWDWKEAVAKIEELKERDFEDESDSSSLNQHDDDLSFSLTT. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00591 622 Pfam Protein kinase domain 327 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00591 622 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Seca3g00591 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 599 IPR046959 -
Seca3g00591 622 ProSiteProfiles Protein kinase domain profile. 324 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00591 622 Gene3D Phosphorylase Kinase; domain 1 296 399 - -
Seca3g00591 622 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Seca3g00591 622 MobiDBLite consensus disorder prediction 598 622 - -
Seca3g00591 622 SUPERFAMILY Protein kinase-like (PK-like) 328 596 IPR011009 -
Seca3g00591 622 Gene3D Ribonuclease Inhibitor 25 214 IPR032675 -
Seca3g00591 622 FunFam pollen receptor-like kinase 1 293 399 - -
Seca3g00591 622 Gene3D Transferase(Phosphotransferase) domain 1 400 617 - -
Seca3g00591 622 SUPERFAMILY L domain-like 29 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00591 Seca-Chr3 9196361 9199424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00591 1 599 Receptor kinase-like Gene Family AT4G31250 45.329 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca3g00591 Pkinase 1.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00591 - - gmx:100803999 894.419